Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14f24
         (662 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ578237-1|CAE18238.1|  107|Homo sapiens immunoglobulin lambda-1...    30   6.4  
AJ426406-1|CAD20026.1|   99|Homo sapiens immunoglobulin lambda l...    30   6.4  

>AJ578237-1|CAE18238.1|  107|Homo sapiens immunoglobulin lambda-1
           variable region protein.
          Length = 107

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 166 RTLLYSFSSS-SWLEARFTSMIISTTLALAASTHIANTTRSFIVTVTFSG 20
           RTL+Y  ++  SW+ ARF+  ++    AL  S         +  ++T+SG
Sbjct: 46  RTLIYDVTNKDSWIPARFSGSLLGGKAALTLSGAQPEDEADYYCSLTYSG 95


>AJ426406-1|CAD20026.1|   99|Homo sapiens immunoglobulin lambda
           light chain variable region protein.
          Length = 99

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 166 RTLLY-SFSSSSWLEARFTSMIISTTLALAASTHIANTTRSFIVTVTFSGRSQV 8
           RTL+Y +++  SW  ARF+  ++    AL  S  +      +   +++SG  +V
Sbjct: 38  RTLVYDAYNKYSWTPARFSGSLLGGKAALTLSGALPEDEADYYCLLSYSGARRV 91


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,741,335
Number of Sequences: 237096
Number of extensions: 1715375
Number of successful extensions: 4362
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4362
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)