Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14f24
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.85 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.85 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.0  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 519 NNRVYFKVHNTKYNQYLKMSSKTDCNNRDRLVY 617
           NN V   V N K   YL++ ++  C N +R  Y
Sbjct: 473 NNAV--AVENFKGGMYLRLKARRACMNYERFTY 503


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 519 NNRVYFKVHNTKYNQYLKMSSKTDCNNRDRLVY 617
           NN V   V N K   YL++ ++  C N +R  Y
Sbjct: 473 NNAV--AVENFKGGMYLRLKARRACMNYERFTY 503


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 482 SLLVCTIAECKSFVRGI 432
           +L+VCT+  C S + GI
Sbjct: 315 ALIVCTVNSCTSMLSGI 331


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 482 SLLVCTIAECKSFVRGI 432
           +L+VCT+  C S + GI
Sbjct: 368 ALIVCTVNSCTSMLSGI 384


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 175 LPARTLLYSFSSSSWLEARFTSMIISTTLAL 83
           +PA T++    +  WL++R T  +I+ ++ L
Sbjct: 261 IPAVTMMLLTLTVLWLDSRSTERMIAASVNL 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,652
Number of Sequences: 438
Number of extensions: 3294
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)