Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14f11
(958 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 26 0.58
DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor pro... 23 5.4
DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor pro... 23 5.4
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 23 5.4
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 23 5.4
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 5.4
AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled rec... 23 5.4
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 22 7.1
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 7.1
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 7.1
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 22 9.4
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 25.8 bits (54), Expect = 0.58
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 433 LTFSISLLCINLLVIKCAAFYFL-GCWMFG 347
++ ++S LC+ LLV+ A Y + G W FG
Sbjct: 81 VSLAVSDLCVALLVMPMALLYEISGNWSFG 110
>DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 22.6 bits (46), Expect = 5.4
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 433 LTFSISLLCINLLVIKC-AAFYFLGCWMFGLGL 338
++ +++ L + +LV+ A+ LG W+FG+ L
Sbjct: 76 VSLAVADLAVAILVMPFNVAYLLLGKWIFGIHL 108
>DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 22.6 bits (46), Expect = 5.4
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 433 LTFSISLLCINLLVIKC-AAFYFLGCWMFGLGL 338
++ +++ L + +LV+ A+ LG W+FG+ L
Sbjct: 76 VSLAVADLAVAILVMPFNVAYLLLGKWIFGIHL 108
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 22.6 bits (46), Expect = 5.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 797 EGNTANTCXTLLXKTGGPRG 738
+ NT+NT T++ GP G
Sbjct: 90 KSNTSNTSKTIILSDKGPEG 109
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 22.6 bits (46), Expect = 5.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 791 NTANTCXTLLXKTGGPRG 738
NT+NT T++ GP G
Sbjct: 92 NTSNTSKTIILSNKGPEG 109
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.6 bits (46), Expect = 5.4
Identities = 7/25 (28%), Positives = 15/25 (60%)
Frame = -3
Query: 377 ILLSGLLDVWAWSEINVRWRLRTVG 303
+L++ L W+++N+RW + G
Sbjct: 69 LLITNLWLKLEWNDVNMRWNVSDYG 93
Score = 22.2 bits (45), Expect = 7.1
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = +3
Query: 285 PEAAQVAHSPKPPAHINLRPSPNIQ 359
P A Q+ H+P H P P ++
Sbjct: 454 PAAIQIGHTPHHHPHPPETPGPQVE 478
>AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled
receptor protein.
Length = 399
Score = 22.6 bits (46), Expect = 5.4
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 433 LTFSISLLCINLLVIKC-AAFYFLGCWMFGLGL 338
++ +++ L + +LV+ A+ LG W+FG+ L
Sbjct: 76 VSLAVADLAVAILVMPFNVAYLLLGKWIFGIHL 108
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 22.2 bits (45), Expect = 7.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 791 NTANTCXTLLXKTGGPRG 738
NT+NT T++ GP G
Sbjct: 92 NTSNTSKTVILSNKGPEG 109
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 22.2 bits (45), Expect = 7.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 117 AVKAGGMRITQHKTPHSKDSKEPANEDLTGLS 212
A AG + I + P D++EP ++ L+G+S
Sbjct: 492 ACTAGTLGII-FQAPSLYDTREPVDQQLSGIS 522
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.2 bits (45), Expect = 7.1
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 159 PHSKDSKEPANEDLTGLSGPSPVPSNPISIAGAP 260
P S + P +++ +SG P+P+ P S+ P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMP 443
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.8 bits (44), Expect = 9.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 791 NTANTCXTLLXKTGGPRG 738
NT+NT T++ GP G
Sbjct: 92 NTSNTSKTVILSDKGPEG 109
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,356
Number of Sequences: 438
Number of extensions: 5138
Number of successful extensions: 28
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31444140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -