Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14f06
(302 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0279 + 28119902-28120058,28120602-28120960,28121314-281213... 30 0.40
08_02_1097 + 24284494-24284496,24284946-24285407,24285476-242864... 29 0.70
08_02_0350 + 16123139-16124041 28 1.6
11_03_0162 - 10956997-10957323,10957390-10957568,10957823-109579... 27 2.1
01_06_0848 + 32426550-32426613,32427013-32427167,32428470-324285... 27 3.7
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 26 6.5
12_02_0706 + 22319293-22319803,22321625-22321766,22322223-223234... 25 8.6
10_03_0021 + 7129786-7130117,7130227-7130347,7131048-7131136,713... 25 8.6
02_05_0114 + 25958834-25961296 25 8.6
02_02_0641 + 12566416-12566599,12567132-12567327,12568319-125684... 25 8.6
01_05_0560 - 23288078-23288370,23288448-23288733 25 8.6
>01_06_0279 +
28119902-28120058,28120602-28120960,28121314-28121393,
28121476-28121527,28121621-28121662,28121750-28121828,
28121991-28122022,28122102-28122170,28122412-28122528,
28122617-28122667,28123175-28123318
Length = 393
Score = 29.9 bits (64), Expect = 0.40
Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 159 QETLRMTSFR-DKSALFGGRVKEGDPPTWP 245
+E L+M R DKSA FGGR DP TWP
Sbjct: 255 KEGLKMKLPRYDKSA-FGGRGDRADPSTWP 283
>08_02_1097 +
24284494-24284496,24284946-24285407,24285476-24286450,
24286566-24286655,24286760-24287021,24287447-24287472
Length = 605
Score = 29.1 bits (62), Expect = 0.70
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 179 RHPQGFLVIQKFAYEEPCHRNTKPNEARSDAED 81
RH + +VI +F YE+ R +E+++DA+D
Sbjct: 178 RHGRNKVVIDEFGYEDLLRRRHTGHESQNDADD 210
>08_02_0350 + 16123139-16124041
Length = 300
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 142 PMKNPVIGTPNQMKRGVMPKMAILYFDLLSFPLASVVP 29
P PV G +++ GV+ + ++ DL +P+A V+P
Sbjct: 197 PCLTPVAGLVDEVPNGVLFDVPMVVLDLDGWPMAHVLP 234
>11_03_0162 -
10956997-10957323,10957390-10957568,10957823-10957922,
10959333-10959397,10959480-10959572,10961062-10961607,
10961627-10961678,10961753-10961884,10963049-10963210,
10963532-10963582
Length = 568
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 208 PNKADLSRKLVILKVSWSSRN 146
PNK +LSR L+++ W +RN
Sbjct: 427 PNKTNLSRLLIVMWQLWKARN 447
>01_06_0848 +
32426550-32426613,32427013-32427167,32428470-32428526,
32428877-32428930,32429349-32429418,32429951-32432034
Length = 827
Score = 26.6 bits (56), Expect = 3.7
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Frame = -2
Query: 229 SPSLTLPPNK---ADLSRKLVIL-KVSWSSRNLPMKNPVIGT-PNQM------KRGVMPK 83
SPS++LP + A LS L VS+ S NLP NP+ PNQ + ++P
Sbjct: 243 SPSMSLPSSSYHMAGLSHGLPYGGSVSFGSPNLPGSNPIQNDWPNQANPYAVDQFNLLPN 302
Query: 82 MAILYFDLLSFPLASVVPVKKNKRNA 5
M L + P++S++ ++ +R A
Sbjct: 303 MLQKQISLPNSPMSSLLFSQQQQRLA 328
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 25.8 bits (54), Expect = 6.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 108 WFGVPMTGFFIGKF 149
WF P T FF+G+F
Sbjct: 874 WFPAPFTSFFLGEF 887
>12_02_0706 +
22319293-22319803,22321625-22321766,22322223-22323451,
22323471-22323916,22324001-22324510
Length = 945
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +3
Query: 132 FFIGKFLDDQETLRMTSFRDKSALFGGRVKEGDPPTWP 245
F++ K D + +R + +D+ G R + P WP
Sbjct: 246 FYVPKNSKDDKNIRAENMKDEDGDGGRRTSKEKPKHWP 283
>10_03_0021 + 7129786-7130117,7130227-7130347,7131048-7131136,
7131375-7131459,7131609-7131771,7132861-7132937,
7133016-7133160,7133236-7133537,7133615-7133720,
7134781-7134935,7135556-7135712,7135799-7135891,
7136232-7136359,7136439-7136696,7136855-7137145,
7137235-7137318,7138335-7138468,7138557-7138784,
7139778-7139958,7140021-7140108,7140268-7140434,
7140750-7141012,7141117-7141120
Length = 1216
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 296 FYCTLNLFATNLHNYHLWPGWWITFF 219
FY NL + L PGWWI F+
Sbjct: 1113 FYSLWNLLSGFLIPQSRIPGWWIWFY 1138
>02_05_0114 + 25958834-25961296
Length = 820
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 72 KMAIFGITPRFIWFGVPMTGFFIGKFLDDQETL 170
+MA G+ P + +G+ + GF G L + E L
Sbjct: 494 RMADHGLEPNSLTYGIAIVGFCRGGNLSEAEVL 526
>02_02_0641 +
12566416-12566599,12567132-12567327,12568319-12568406,
12569279-12569330,12569423-12569765,12571282-12571684,
12571770-12571841,12572632-12572817,12573174-12573239,
12574802-12575174,12575917-12576014,12578179-12578305,
12578734-12578924,12579265-12579540,12579837-12579866
Length = 894
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 173 PQGFLVIQKFAYEEPCH 123
P GF+V K +EE CH
Sbjct: 614 PYGFVVNNKLLFEEDCH 630
>01_05_0560 - 23288078-23288370,23288448-23288733
Length = 192
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -3
Query: 213 CLQTKQTYHGSSSSSRFLGHPEICL*RTLSSEHQ 112
C K T + SSSSSR G E L L S H+
Sbjct: 59 CQPDKPTLYSSSSSSRLAGDMECQLSCALGSCHR 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,464,710
Number of Sequences: 37544
Number of extensions: 162793
Number of successful extensions: 389
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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