Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14f06
         (302 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   2.5  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    20   5.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   5.8  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    20   7.7  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 293 YCTLNLFATNLHNYH 249
           YC+ N   T+++ YH
Sbjct: 45  YCSRNSLMTHIYTYH 59


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 74  NGHLRHHSSLHLVWCSD 124
           N HL+ HS+++   C++
Sbjct: 33  NSHLKSHSNVYQYRCAN 49


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 77  GHLRHHSSLHL 109
           GH + HS++HL
Sbjct: 192 GHRQRHSTIHL 202


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 4/12 (33%), Positives = 11/12 (91%)
 Frame = -3

Query: 45 LRVWFQSRKISV 10
          +++WFQ+R++ +
Sbjct: 52 IKIWFQNRRMKL 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,345
Number of Sequences: 438
Number of extensions: 1608
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)