Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14f02
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 1.4
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 27 1.8
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 27 1.8
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 27 2.4
SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac... 26 4.2
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 5.6
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 7.4
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 7.4
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p... 25 9.8
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 25 9.8
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 486 HSIEKTKYR*IKF-PQKSFYIFRNVIFMLFFFVSCLVCV 373
+ I TKY + F P+ + F+N+ F FV+ L C+
Sbjct: 131 NKIRTTKYTPVSFIPKNLWNQFKNIANAFFLFVTLLQCI 169
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 257 RIRANKYWTCVRKPALQQTPKANPV 331
++ N +WT +PA+ P A+PV
Sbjct: 476 KLNGNSWWTVGSQPAVNGAPSADPV 500
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/60 (23%), Positives = 31/60 (51%)
Frame = +2
Query: 230 LFSARNRSTRIRANKYWTCVRKPALQQTPKANPVPRSSRWEVSNAMPHTHTRHDTKKKSI 409
L +A ++ I + + C++K +LQ + + + S++ ++N PHT D ++ I
Sbjct: 358 LINAEDKHIAIYSVETRECIKKISLQSKVTSICLSKDSKYALTNLEPHTTFLWDLEENRI 417
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 421 PKNIKTLLWKFYLSIFCFFYRMFVTVLLFFNKYV 522
P K +LW ++ + F RMF+T + + ++V
Sbjct: 185 PNAFKNVLWNSFILLILGFARMFLTKSINYQEHV 218
>SPAC6F12.04 |||COPI-coated vesicle associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 266 HVSGLTDYGPRKARIRVRDENV 201
+V+GL DY PR R D+NV
Sbjct: 108 YVAGLQDYAPRSMRDNDWDDNV 129
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/39 (28%), Positives = 15/39 (38%)
Frame = +3
Query: 219 PDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPTPFP 335
P+PG + P Y+ P +N P R P P
Sbjct: 115 PNPGNGNVGLNNPSYMNSQASPNIMNAPLQRDTSVPPAP 153
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 451 FYLSIFCFFYRMFVTVLLFFNKYVRLNR 534
FY S+F FF +F + L FN + RL R
Sbjct: 112 FYFSLFSFFSFLFTS--LHFNFFFRLCR 137
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +2
Query: 224 SWLFSARNRSTRIRANKYWTCVRKPALQQTPKANPVPRSSRWEVSNAMPHTHT 382
S L R S R+R+N+ V +P + QTP N W + + H ++
Sbjct: 248 SELLRRRIESARLRSNQLNEPVEQPRVVQTPVTN-ASEQQAWNDFDEILHANS 299
>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 359
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 430 YFSERNFYAFFLCIMSCVCVW 368
Y S R Y + +++CVC+W
Sbjct: 160 YVSRRVVYCKHIQLVACVCLW 180
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 186 NNHPGHVLISNPDPGFSRPVIGQPGYVPISTGPAYVNRP 302
N PG+ + SN P P + PG +S P+ + P
Sbjct: 198 NVRPGYGMPSNQKPPNFAPGMPAPGPTAVSASPSLQSMP 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,446
Number of Sequences: 5004
Number of extensions: 39950
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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