Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14f02
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0872 + 22097087-22097961,22098083-22098155 33 0.15
01_01_0004 + 15599-15976,16383-16474,16558-17258,17501-17571,179... 29 1.9
01_06_0203 - 27487469-27489787 29 3.3
08_02_0638 + 19603399-19604679 28 4.3
05_03_0676 - 16853937-16854042,16854605-16854700,16854920-168550... 28 5.7
07_03_0810 - 21674710-21674960,21675318-21675405,21675739-216759... 27 7.5
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 27 7.5
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 27 7.5
11_06_0610 - 25449085-25453284 27 10.0
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 27 10.0
06_03_0508 - 21607706-21608863,21608943-21609090,21609411-216095... 27 10.0
01_07_0078 - 40923115-40924016,40924341-40924416,40924686-40924718 27 10.0
>08_02_0872 + 22097087-22097961,22098083-22098155
Length = 315
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2
Query: 393 VSCLVCVCGIALLTSHRELRGTGLAFGVCCRAG-LRTQVQYLLARIRVDRLRAEKSQDP 220
V C +C+ + +HR RG AF C AG + ++Q +A +R R + DP
Sbjct: 110 VFCKICMDAVPPSAAHRASRGCDHAFCAACLAGYVGAKIQERIADVRCPEERCRGALDP 168
>01_01_0004 +
15599-15976,16383-16474,16558-17258,17501-17571,
17968-18057,18142-18321,18531-18593
Length = 524
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 263 RANKYWTCVRKPALQQTPKAN--PVPRSSRWEVSNAMPHTHTRHDTKKKSIK 412
RA + W VRK + +N P RS +W S+ M H K+K I+
Sbjct: 437 RAQQNWDKVRKFVMYTWGPSNLDPSDRSGKWPESSVMDSLHGSFHKKRKPIR 488
>01_06_0203 - 27487469-27489787
Length = 772
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -2
Query: 492 YKHSIEKTKYR*IKFPQKSFYIFRNVIFMLFFFVSCL-VCVCGIALLTSHRELRGTGLAF 316
+ ++ K +Y+ I+ PQ FY F F C +C+ + + L GTG+ +
Sbjct: 319 FSYNCGKERYKFIEIPQTDFYDFDLGFNQSISFEECQNICLSTCSCIAFSYRLTGTGVCY 378
>08_02_0638 + 19603399-19604679
Length = 426
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 219 PDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPTPFP 335
P P R G S+ PAY+ RP+ + P+PFP
Sbjct: 177 PAPSSLRSAATAAGGGNPSSLPAYLLRPFAQKHHPSPFP 215
>05_03_0676 -
16853937-16854042,16854605-16854700,16854920-16855089,
16856742-16856825,16857042-16857119,16858053-16858216,
16858345-16858429
Length = 260
Score = 27.9 bits (59), Expect = 5.7
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = -2
Query: 435 FYIFRNVIFMLFFFVSCLVCV 373
FY FR +++++F F +C++ V
Sbjct: 96 FYCFRRIVYIIFGFNTCIISV 116
>07_03_0810 -
21674710-21674960,21675318-21675405,21675739-21675990,
21676521-21676685,21677358-21678494
Length = 630
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 336 RGTGLAFGVCCRAGLRTQVQYLLARIRVDRLRAEK 232
RG G FG CRAG R V+ + + + R +
Sbjct: 593 RGNGFGFGGYCRAGARAAVRVIDREMSIHSTRVPR 627
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 219 PDPGFSRPVIGQPGYVPISTGPA-YVNRPYNRPQRPTPFP 335
P P ++ P G P P + PA +V PY P P P
Sbjct: 169 PSPSYALPPAGYPAVPPYQSYPASHVPAPYPTSAYPHPPP 208
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 311 TPKANPVPRSSRWEVSNAMPHTHTRHDTKKK 403
TP P+P S+ S A P HTR K K
Sbjct: 198 TPPQAPLPAPSKSRASQAPPPAHTRATKKAK 228
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = +3
Query: 201 HVLISNPDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPTPFPGARG 347
HV +P PG +P +P+ GP + Y P P + G
Sbjct: 411 HVCPGHPTPGKPSEPPEKPPLIPVPVGPPEKSPAYEEPPAAPSTPTSHG 459
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 369 GIALLTSHR-ELRGTGLAFGVCCRAGLRTQV 280
G + L HR + GT CCR+G+RT V
Sbjct: 101 GSSFLQLHRLAVEGTRRLLAACCRSGVRTVV 131
>06_03_0508 -
21607706-21608863,21608943-21609090,21609411-21609523,
21609612-21609705,21609841-21609950,21610093-21610257,
21611660-21611800
Length = 642
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2
Query: 453 KFPQKSFYIFRNVIFMLFFFVSCLV 379
K K+ ++F +IF LFFF++ L+
Sbjct: 411 KITLKTAFMFPGIIFALFFFLNALI 435
>01_07_0078 - 40923115-40924016,40924341-40924416,40924686-40924718
Length = 336
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +3
Query: 195 PGHVLISNPDPGFSRPVIGQPGYVPISTGPAYVNR--PYNRPQRPTPFP 335
P +S P P +RP GY+ P+Y NR PY P P P
Sbjct: 242 PAPAPMSMPMP-MARPGPSSQGYIDEEYSPSYYNRSSPYEPYYYPQPSP 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,240,670
Number of Sequences: 37544
Number of extensions: 263723
Number of successful extensions: 826
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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