Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14f02
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68104-1|CAA92112.1|  866|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe...    27   9.0  
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe...    27   9.0  
U41746-8|AAO25991.1|  430|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U41746-7|AAK71873.1|  803|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AF067609-5|AAC17534.1|  644|Caenorhabditis elegans Hypothetical ...    27   9.0  
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty...    27   9.0  

>Z68104-1|CAA92112.1|  866|Caenorhabditis elegans Hypothetical
           protein F08B12.1 protein.
          Length = 866

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
 Frame = -2

Query: 483 SIEKTKYR*IKFPQKSFYIFR------NVIFMLF-FFVSCLVCVCGIALLTSHRELRGTG 325
           S+EK  ++ I+F QK + +        +V+F++F FF  C VC+C  +    + + R  G
Sbjct: 88  SVEKKYWQWIEF-QKGWIVLSVGLVAISVLFVVFYFFYKCCVCICSRSSKKQNTDARYDG 146

Query: 324 LAFGVC 307
               +C
Sbjct: 147 CKRSMC 152


>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defective
            protein 19,isoform a protein.
          Length = 1783

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 424  KNIKTLLWKFYLSIFCFFYRMFVTVLLFF 510
            + I+TLLW F  S     Y   + VLLFF
Sbjct: 1230 EGIRTLLWTFMKSFQALPYVALLIVLLFF 1258


>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defective
            protein 19,isoform b protein.
          Length = 1877

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 424  KNIKTLLWKFYLSIFCFFYRMFVTVLLFF 510
            + I+TLLW F  S     Y   + VLLFF
Sbjct: 1230 EGIRTLLWTFMKSFQALPYVALLIVLLFF 1258


>U41746-8|AAO25991.1|  430|Caenorhabditis elegans Hypothetical
           protein T18H9.7c protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +2

Query: 323 NPVPRSSRWEVSNAMP--HTHTRHDTKKKSIKITFR 424
           NPVP+SS++   +  P   ++T  ++KK + K+T +
Sbjct: 285 NPVPQSSQYSYGSDFPPSSSNTTPNSKKDTAKVTIK 320


>U41746-7|AAK71873.1|  803|Caenorhabditis elegans Hypothetical
           protein T18H9.7a protein.
          Length = 803

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +2

Query: 323 NPVPRSSRWEVSNAMP--HTHTRHDTKKKSIKITFR 424
           NPVP+SS++   +  P   ++T  ++KK + K+T +
Sbjct: 658 NPVPQSSQYSYGSDFPPSSSNTTPNSKKDTAKVTIK 693


>AF067609-5|AAC17534.1|  644|Caenorhabditis elegans Hypothetical
           protein C23H5.7 protein.
          Length = 644

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 415 YVPKNIKTL-LWKFYLSIFCFFYRMFVTVLLFF 510
           YVP N K   +W F++S F   Y MF  V+  F
Sbjct: 40  YVPFNSKYYYIWSFFVS-FGVMYNMFAMVIFIF 71


>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
            calcium channelalpha 1 subunit protein.
          Length = 1783

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 424  KNIKTLLWKFYLSIFCFFYRMFVTVLLFF 510
            + I+TLLW F  S     Y   + VLLFF
Sbjct: 1230 EGIRTLLWTFMKSFQALPYVALLIVLLFF 1258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,755,593
Number of Sequences: 27780
Number of extensions: 244128
Number of successful extensions: 832
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)