Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14e18
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 33 0.050
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 31 0.15
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 31 0.15
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 29 0.47
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 29 0.62
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 29 0.82
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 28 1.1
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 28 1.4
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 27 1.9
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 26 4.4
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p... 26 4.4
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 26 4.4
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 26 5.8
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 26 5.8
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 32.7 bits (71), Expect = 0.050
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 485 IGVMFSSYVWGFCADTRGRRTTLLFAMPVGSIFGFAASMAPSYISLAI 628
+G++ + VW ADT GRR +F A +P++ S+ +
Sbjct: 129 LGLLVGAMVWSLSADTIGRRWAFNLTFLFTGVFAVIAGASPNFASICV 176
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 31.1 bits (67), Expect = 0.15
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +2
Query: 443 LTTAEQGLLSAIPLIGVMFSSYVWGFCADTRGRRTTLLFAMPVGSIFGFAASM--APSYI 616
L++A QGLL+ + +G +F + AD G+R +++ V I G + PS++
Sbjct: 57 LSSARQGLLTGMVNVGSLFGCIISSPIADRFGKRLSIIGFCAV-YIIGIIVQVTAVPSWV 115
Query: 617 SLAILKIF 640
+ + KI+
Sbjct: 116 QIMVAKIW 123
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 31.1 bits (67), Expect = 0.15
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 446 TTAEQGLLSAIPLIGVMFSSYVWGFCADTRGRRTTLLFAMPVGSI-FGFAASMAPSYISL 622
++A QGL++ + +G F ++ D G+RT+++F V I + PS++ +
Sbjct: 54 SSARQGLITGMVNVGSFFGCFLSSPLMDRIGKRTSIMFWTIVYLIGIILQVTAVPSWVQI 113
Query: 623 AILKIF 640
+ KI+
Sbjct: 114 MVAKIW 119
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 29.5 bits (63), Expect = 0.47
Identities = 25/104 (24%), Positives = 44/104 (42%)
Frame = +2
Query: 341 NIIMLTSCCLIILAMYMDIFGFSVVMPAVACDMDLTTAEQGLLSAIPLIGVMFSSYVWGF 520
N+ ++ S CL IF +V V + T A G+ ++ ++G VW
Sbjct: 76 NVAVMGSACLCA-GFGSSIFSGAVPEVMVKFHVCRTVALLGI--SLYVLGFASGPVVWAP 132
Query: 521 CADTRGRRTTLLFAMPVGSIFGFAASMAPSYISLAILKIFVSQF 652
+ GRR ++ A+ + IF A + A ++ I + F F
Sbjct: 133 MCELFGRRRPMIIAVFIFCIFHIAVATAKDIQTVMICRFFCGFF 176
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 29.1 bits (62), Expect = 0.62
Identities = 19/83 (22%), Positives = 34/83 (40%)
Frame = +2
Query: 404 FSVVMPAVACDMDLTTAEQGLLSAIPLIGVMFSSYVWGFCADTRGRRTTLLFAMPVGSIF 583
FSV A+ ++ L + L G + VW ++ GR+ LL M IF
Sbjct: 154 FSVPAEAITTIFHISLTVSLLTMTVFLCGYIAGPIVWAPLSELSGRKLPLLIGMFGFGIF 213
Query: 584 GFAASMAPSYISLAILKIFVSQF 652
+ ++A ++ + + F F
Sbjct: 214 NISVAVAKDIQTIMMCRFFSGFF 236
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 28.7 bits (61), Expect = 0.82
Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
Frame = +2
Query: 356 TSCCLIILAMYMDIFG--FSVVMPAVACDMDLTTAEQGLLSAIPLIGVMFSSYVWGFCAD 529
T+C L +A+ F+V A+ ++ L + L+G +W ++
Sbjct: 137 TTCILAYVALCSSFASSVFAVPAEAITTVFHISLTVSLLTMTVFLLGYCSGPIIWAPLSE 196
Query: 530 TRGRRTTLLFAMPVGSIFGFAASMAPSYISLAILKIFVSQF 652
GR+ +L M IF + ++ ++ + + F F
Sbjct: 197 LSGRKPPILIGMLGFGIFNISVAVGKDIQTIMMCRFFAGFF 237
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = +2
Query: 395 IFGFSVVMPAVACDMDLTTAEQGLLSAIPLIGVMFSSYVWGFCADTRGRRTTLLFAMPVG 574
+F + + A + LT A G+ ++ + G +W ++ GR+ L+ M +
Sbjct: 116 VFSAAATIFAAKYHIGLTVALLGM--SLYVCGFASGPILWAPISELVGRKIPLIVGMFMF 173
Query: 575 SIFGFAASMAPSYISLAILKIF 640
SIF A ++A ++ I + F
Sbjct: 174 SIFSIAVAVAKDVQTVMICRFF 195
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Frame = +2
Query: 347 IMLTSCCLIILAMYMDIFGFSVVMPAVA--CDMDLTTAEQGLLSA-IPLIGVMFSSYVWG 517
I + + +I + ++G SV MP++ C+ +L A + +IGVM ++
Sbjct: 37 IRIINTIIISFMTMLCMYGSSVFMPSIPELCEKFGEPETLVVLGATLYVIGVMLGPLIFS 96
Query: 518 FCADTRGRRTTLLFAMPVGSIFGFAASMAPSYISLAILKIFVSQFYIIG 664
++ GRR +F + ++ +++ + + + F F +G
Sbjct: 97 PLSELYGRRPLNIFGYTLFALMQIPTALSVNLAMFVVFRFFSGFFGSVG 145
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -3
Query: 267 IKAIFQIFS-IRLDPYKNQCSSLLLSNFALPLELALFHLEK*FFYVLSVISVREF 106
I AI +I+ I L PY + + LL SNF L L LF + ++ S+ +VR F
Sbjct: 613 IFAIARIYRCILLIPYTRKIAKLLFSNFKQLLNLMLFLVI--VLFIASLCAVRLF 665
>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 446 TTAEQGLLSAIPLIGVMFSSYVWGFCADTRGRRTTLLFAMPVGSI-FGFAASMAPSYISL 622
++A QGL++ + +G M + D G+R +++F V I + PS++ +
Sbjct: 54 SSARQGLITGMVNVGSMTGCILSSPLMDRIGKRVSIMFWTIVYLIGIILQVTAVPSWVQI 113
Query: 623 AILKIF 640
+ KI+
Sbjct: 114 MVAKIW 119
>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 4.4
Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Frame = +2
Query: 377 LAMYMDIFGFSVV---MPAVACDMDLTTAEQGLLSAIPLIGVMFSSYVWGFCADTRGRRT 547
L + FG SV+ + V+ D+ + L ++ ++G V ++ GRR
Sbjct: 109 LLVVCSAFGSSVIAGDLEDVSRDLKVGPEVANLSCSLMVVGFGIGPLVISPLSEMIGRRI 168
Query: 548 TLLFAMPVGSIFGFAASMAPSYISLAILKIFVSQF 652
L + + + ++AP+ L I++ F F
Sbjct: 169 VYLVTLMIYIVLQIPCALAPNIACLLIVRFFCGCF 203
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/53 (22%), Positives = 24/53 (45%)
Frame = +2
Query: 482 LIGVMFSSYVWGFCADTRGRRTTLLFAMPVGSIFGFAASMAPSYISLAILKIF 640
++G W ++ GR+T L + + S+F A + A ++ I + F
Sbjct: 184 MLGYCLGPICWAPMSEITGRKTPLYIGLFLFSVFQIAVATAQDIQTIMICRFF 236
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +2
Query: 446 TTAEQGLLSAIPLIGVMFSSYVWGFCADTRGRRTTLL-FAM--PVGSIFGFAASMAPSYI 616
++A QGL++ + +G F + D G+R +++ F + +G I A PS++
Sbjct: 54 SSARQGLITGMVNVGSFFGCLISSPTTDRIGKRNSIIGFCVIYLIGVIIQVTA--VPSWV 111
Query: 617 SLAILKIF 640
+ + KI+
Sbjct: 112 QIMVAKIW 119
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 446 TTAEQGLLSAIPLIGVMFSSYVWGFCADTRGRRTTLLFAMPVGSI-FGFAASMAPSYISL 622
+++ QGL++ + +G F + AD G+R +++ V I + PS++ +
Sbjct: 22 SSSRQGLITGMVNVGSFFGCLLSSPVADKIGKRLSIIVWTTVYLIGIIIQVTTVPSWVQI 81
Query: 623 AILKIF 640
+ KI+
Sbjct: 82 LVAKIW 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,683
Number of Sequences: 5004
Number of extensions: 51899
Number of successful extensions: 153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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