Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14e14
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   3.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   3.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 562  HNIYQKVQFGTSVVNHHSRIL-LSNTKYQMVD 470
            +N+Y +V  G   +NH  R L   NT ++  D
Sbjct: 1247 YNLYTRVVDGREELNHGKRTLPAKNTYFEATD 1278


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 562  HNIYQKVQFGTSVVNHHSRIL-LSNTKYQMVD 470
            +N+Y +V  G   +NH  R L   NT ++  D
Sbjct: 1243 YNLYTRVVDGREELNHGKRTLPAKNTYFEATD 1274


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 571 LSIHNIYQKVQFGTSVVNHHSRILLSNTKYQMVDDHC 461
           L++ N  QKV +G    + + RIL++N    + +  C
Sbjct: 377 LAVSNRIQKVIYGFDFNDVNFRILIANVNDLIKNTRC 413


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 475 PFGISCLIGG 504
           PFGI CLI G
Sbjct: 288 PFGIMCLIAG 297


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 496 IGGFDYDGSPHLFQT 540
           I GF  D  PHLF++
Sbjct: 224 IDGFRIDAVPHLFES 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,764
Number of Sequences: 438
Number of extensions: 3221
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)