Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14e07
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 208 5e-55
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 59 7e-10
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 40 4e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.12
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.0
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 27 3.5
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 26 4.7
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 4.7
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 6.2
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz... 26 6.2
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 8.2
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 208 bits (509), Expect = 5e-55
Identities = 110/164 (67%), Positives = 122/164 (74%), Gaps = 3/164 (1%)
Frame = +3
Query: 234 DVQFED--NLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDS 404
D QFED +LP ILNALEV+ + RLVLEVAQH+GENTVRTIAMDGTEGLVRG V+D+
Sbjct: 66 DCQFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDT 125
Query: 405 GSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIK 584
GSPI IPVG TLGRI+NVIGEP+DERGPI K + IHA+AP F + S EIL TGIK
Sbjct: 126 GSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIK 185
Query: 585 VVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSV 716
VVDLLAPYA TV I ELINN+AKAHGGYSV
Sbjct: 186 VVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGYSV 229
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 58.8 bits (136), Expect = 7e-10
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Frame = +3
Query: 315 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 491
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 492 IPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 605
I T + + +AP + + E + TG+K +D + P
Sbjct: 149 IKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVP 186
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 39.9 bits (89), Expect = 4e-04
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Frame = +3
Query: 306 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 482
VLEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID+
Sbjct: 63 VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDK 118
Query: 483 RGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVD 593
+ + I+ +E++ TGI +D
Sbjct: 119 GPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSID 155
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.5 bits (68), Expect = 0.12
Identities = 24/92 (26%), Positives = 40/92 (43%)
Frame = -2
Query: 580 IPVTRISCCTDMSTNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRIGEPE 401
+P T SC T S +G S+ ++ ++ + P S+ + I + S T P
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTN-SSPLPT 280
Query: 400 SSTGCPRTKPSVPSMAMVRTVFSPKCWATSST 305
+ST C T S+P T +P TS++
Sbjct: 281 TSTSC-TTSTSIPPTGNSTTPVTPTVPPTSTS 311
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 490 GPRSSIGSPITLMMRPRVSA-PTGIRIGEPESSTGCPRTKPSVPSM 356
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 26.6 bits (56), Expect = 3.5
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +3
Query: 297 PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPI 476
P + E +H G N+ EG+V+ L++ P+ IPV + N IGE
Sbjct: 10 PAIKNEPPKHYGPNSA------DREGIVKAYKELEAELPVTIPVIIDGKEVETNTIGE-- 61
Query: 477 DERGPIPTDKTAA-IHAEAPEFVDMSVQQEILVTGIKVVDLLAPYA 611
+R P K A H + V+ ++ E + G KV + L P+A
Sbjct: 62 -QRCPFEHKKVVARYHRAGAKHVEDAI--EAALRGKKVWESL-PFA 103
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 4.7
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Frame = -1
Query: 668 NQYSFAHTSSAKQPNLSSFGIRSEQIDDFYTSYENLLL---HRHVDKLWSFSMNSSSLVG 498
N +F + K+ L FG E + F Y LLL HR+ +K S+ L
Sbjct: 456 NWSNFLYNGKTKKIELLDFGASIEYDEKFIKKYCRLLLAAAHRNREKCKKLSVELGYLNN 515
Query: 497 GDGTTLVNRFADYIDDATEGFS 432
+ +++ + I E F+
Sbjct: 516 HESAQMIDAHINSIFTLAEPFA 537
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 115 NPFQNVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSV 225
NPF N ++S+++MP L+NLQE + + P S+
Sbjct: 115 NPFPNGKQSIKAMP-----SLVNLQEDSVISKFPNSL 146
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 366 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 482
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
>SPBC1A4.06c |||mitochondrial matrix protein import
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -1
Query: 632 QPNLSSFGIRSEQIDDFYTSYENLLLHRHVDKLWSFSMNSSSLVG 498
+P+ SSF +E + S +LL+ + + KL SFS+ + S+ G
Sbjct: 322 KPDTSSFEKCAELMLTNQISTRSLLISKSIKKLTSFSILTQSIKG 366
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 430 PTGIRIGEPESSTGCPRTKPSVPSMAMV 347
P G +G PES+ KPS PS + +
Sbjct: 795 PLGHALGNPESNNSSNSFKPSHPSQSFL 822
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,005,305
Number of Sequences: 5004
Number of extensions: 62105
Number of successful extensions: 199
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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