Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14e03
(527 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR542266-1|CAG47062.1| 118|Homo sapiens NDUFA7 protein. 64 4e-10
CR456915-1|CAG33196.1| 118|Homo sapiens NDUFA7 protein. 64 4e-10
BC107892-1|AAI07893.1| 121|Homo sapiens NDUFA7 protein protein. 64 4e-10
BC003102-1|AAH03102.1| 113|Homo sapiens NADH dehydrogenase (ubi... 64 4e-10
AF050637-1|AAD05427.1| 113|Homo sapiens NADH-ubiquinone oxidore... 64 4e-10
BC103913-1|AAI03914.1| 546|Homo sapiens transcription elongatio... 31 1.9
BC103912-1|AAI03913.1| 544|Homo sapiens TCEB3C protein protein. 31 1.9
AB076840-1|BAC01113.1| 546|Homo sapiens transcription elongatio... 31 1.9
U59464-1|AAC50550.1| 1447|Homo sapiens PATCHED protein. 29 7.6
U43148-1|AAC50496.1| 1296|Homo sapiens PTC protein. 29 7.6
AY395768-1|AAR21239.1| 651|Homo sapiens patched protein. 29 7.6
AL161729-2|CAH73818.1| 1296|Homo sapiens patched homolog 1 (Dros... 29 7.6
AL161729-1|CAH73817.1| 1447|Homo sapiens patched homolog 1 (Dros... 29 7.6
AB209495-1|BAD92732.1| 586|Homo sapiens patched variant protein. 29 7.6
>CR542266-1|CAG47062.1| 118|Homo sapiens NDUFA7 protein.
Length = 118
Score = 63.7 bits (148), Expect = 4e-10
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 110 LQAFRNFLLGRKHTNALRFE-PLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPI 286
+Q RN+ G L+ +S RTQPPP++P GPSHK ++NYY TRD RRE PP
Sbjct: 13 IQRLRNWASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPS 72
Query: 287 DVTKELLSASSDKGAPKQA 343
+ + S K A A
Sbjct: 73 IIMSSQKALVSGKPAESSA 91
>CR456915-1|CAG33196.1| 118|Homo sapiens NDUFA7 protein.
Length = 118
Score = 63.7 bits (148), Expect = 4e-10
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 110 LQAFRNFLLGRKHTNALRFE-PLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPI 286
+Q RN+ G L+ +S RTQPPP++P GPSHK ++NYY TRD RRE PP
Sbjct: 13 IQRLRNWASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPS 72
Query: 287 DVTKELLSASSDKGAPKQA 343
+ + S K A A
Sbjct: 73 IIMSSQKALVSGKPAESSA 91
>BC107892-1|AAI07893.1| 121|Homo sapiens NDUFA7 protein protein.
Length = 121
Score = 63.7 bits (148), Expect = 4e-10
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 110 LQAFRNFLLGRKHTNALRFE-PLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPI 286
+Q RN+ G L+ +S RTQPPP++P GPSHK ++NYY TRD RRE PP
Sbjct: 16 IQRLRNWASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPS 75
Query: 287 DVTKELLSASSDKGAPKQA 343
+ + S K A A
Sbjct: 76 IIMSSQKALVSGKPAESSA 94
>BC003102-1|AAH03102.1| 113|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 alpha subcomplex, 7, 14.5kDa protein.
Length = 113
Score = 63.7 bits (148), Expect = 4e-10
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 110 LQAFRNFLLGRKHTNALRFE-PLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPI 286
+Q RN+ G L+ +S RTQPPP++P GPSHK ++NYY TRD RRE PP
Sbjct: 8 IQRLRNWASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPS 67
Query: 287 DVTKELLSASSDKGAPKQA 343
+ + S K A A
Sbjct: 68 IIMSSQKALVSGKPAESSA 86
>AF050637-1|AAD05427.1| 113|Homo sapiens NADH-ubiquinone
oxidoreductase B14.5A subunit protein.
Length = 113
Score = 63.7 bits (148), Expect = 4e-10
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 110 LQAFRNFLLGRKHTNALRFE-PLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPI 286
+Q RN+ G L+ +S RTQPPP++P GPSHK ++NYY TRD RRE PP
Sbjct: 8 IQRLRNWASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPS 67
Query: 287 DVTKELLSASSDKGAPKQA 343
+ + S K A A
Sbjct: 68 IIMSSQKALVSGKPAESSA 86
>BC103913-1|AAI03914.1| 546|Homo sapiens transcription elongation
factor B polypeptide 3C (elongin A3) protein.
Length = 546
Score = 31.5 bits (68), Expect = 1.9
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +2
Query: 137 GRKHTNALRFEPLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKE--LLS 310
GR H +A + PL+ Q P+ SH H +R A + +PP+ ++ L +
Sbjct: 194 GRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKS--SRGASAQKSPPVQESQSERLQA 251
Query: 311 ASSDKGAPKQAANVRPTPGHLYA--WD 385
A +D PK P H+++ WD
Sbjct: 252 AGADSAGPK------TVPSHVFSELWD 272
>BC103912-1|AAI03913.1| 544|Homo sapiens TCEB3C protein protein.
Length = 544
Score = 31.5 bits (68), Expect = 1.9
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +2
Query: 137 GRKHTNALRFEPLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKE--LLS 310
GR H +A + PL+ Q P+ SH H +R A + +PP+ ++ L +
Sbjct: 192 GRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKS--SRGASAQKSPPVQESQSERLQA 249
Query: 311 ASSDKGAPKQAANVRPTPGHLYA--WD 385
A +D PK P H+++ WD
Sbjct: 250 AGADSAGPK------TVPSHVFSELWD 270
>AB076840-1|BAC01113.1| 546|Homo sapiens transcription elongation
factor Elongin A3 protein.
Length = 546
Score = 31.5 bits (68), Expect = 1.9
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +2
Query: 137 GRKHTNALRFEPLVSARTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKE--LLS 310
GR H +A + PL+ Q P+ SH H +R A + +PP+ ++ L +
Sbjct: 194 GRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKS--SRGASAQKSPPVQESQSERLQA 251
Query: 311 ASSDKGAPKQAANVRPTPGHLYA--WD 385
A +D PK P H+++ WD
Sbjct: 252 AGADSAGPK------TVPSHVFSELWD 272
>U59464-1|AAC50550.1| 1447|Homo sapiens PATCHED protein.
Length = 1447
Score = 29.5 bits (63), Expect = 7.6
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 230 HAHNYYYTRDARREVA-PPIDVTKELLSASS 319
H H YY T + R E++ P+ VT++ LS S
Sbjct: 671 HTHVYYTTAEPRSEISVQPVTVTQDTLSCQS 701
>U43148-1|AAC50496.1| 1296|Homo sapiens PTC protein.
Length = 1296
Score = 29.5 bits (63), Expect = 7.6
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 230 HAHNYYYTRDARREVA-PPIDVTKELLSASS 319
H H YY T + R E++ P+ VT++ LS S
Sbjct: 520 HTHVYYTTAEPRSEISVQPVTVTQDTLSCQS 550
>AY395768-1|AAR21239.1| 651|Homo sapiens patched protein.
Length = 651
Score = 29.5 bits (63), Expect = 7.6
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 230 HAHNYYYTRDARREVA-PPIDVTKELLSASS 319
H H YY T + R E++ P+ VT++ LS S
Sbjct: 266 HTHVYYTTAEPRSEISVQPVTVTQDTLSCQS 296
>AL161729-2|CAH73818.1| 1296|Homo sapiens patched homolog 1
(Drosophila) protein.
Length = 1296
Score = 29.5 bits (63), Expect = 7.6
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 230 HAHNYYYTRDARREVA-PPIDVTKELLSASS 319
H H YY T + R E++ P+ VT++ LS S
Sbjct: 520 HTHVYYTTAEPRSEISVQPVTVTQDTLSCQS 550
>AL161729-1|CAH73817.1| 1447|Homo sapiens patched homolog 1
(Drosophila) protein.
Length = 1447
Score = 29.5 bits (63), Expect = 7.6
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 230 HAHNYYYTRDARREVA-PPIDVTKELLSASS 319
H H YY T + R E++ P+ VT++ LS S
Sbjct: 671 HTHVYYTTAEPRSEISVQPVTVTQDTLSCQS 701
>AB209495-1|BAD92732.1| 586|Homo sapiens patched variant protein.
Length = 586
Score = 29.5 bits (63), Expect = 7.6
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 230 HAHNYYYTRDARREVA-PPIDVTKELLSASS 319
H H YY T + R E++ P+ VT++ LS S
Sbjct: 107 HTHVYYTTAEPRSEISVQPVTVTQDTLSCQS 137
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,631,939
Number of Sequences: 237096
Number of extensions: 1545705
Number of successful extensions: 3489
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3472
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5103531180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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