Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14d24
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              32   0.005
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   1.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 31.9 bits (69), Expect = 0.005
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 149 CYRNQRPVCGTDGKTYNNECLL 214
           C R  RPVC ++GK Y N C L
Sbjct: 110 CPRRHRPVCASNGKIYANHCEL 131



 Score = 29.1 bits (62), Expect = 0.037
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 473 CTREMKPVCGSDGITYNNDCLLNCA 547
           C R  +PVC S+G  Y N C L+ A
Sbjct: 110 CPRRHRPVCASNGKIYANHCELHRA 134


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 539 NCATINDSRLGIEYYGPCADK 601
           N  TIN+S    E Y  C DK
Sbjct: 51  NSGTINESEFNDENYWQCNDK 71


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 238 GIISGGTVEQALVVVCFPISSAHWSL 161
           GI SG +   +LVVV   IS+  W L
Sbjct: 53  GIASGLSAMLSLVVVTVAISTGEWLL 78


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
 Frame = -3

Query: 522 LYVIPSLPQTGFISRVHVHEGYLLGPSTILTSSAQRPEYKM------LRPGFVAVAQFNR 361
           LY   SL Q        +   +L G + + T   + P   +      L  GF+A A+ N 
Sbjct: 35  LYRASSLQQRRGGLEYFLLSAFLFGANALFTPGQELPARGLTAVFLGLNLGFLAWAKHNP 94

Query: 360 QALSYVWLSLPH 325
           +    +W  +PH
Sbjct: 95  RGKDALWSLVPH 106


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 399 AFCTRAFAQTKSKSWTAPANTL 464
           A  T  + +T++++WT   NTL
Sbjct: 226 AIPTVPYTETETETWTRVFNTL 247


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 187  PISSAHWSLVS 155
            PI+  HW+LVS
Sbjct: 1538 PINEFHWTLVS 1548


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 187  PISSAHWSLVS 155
            PI+  HW+LVS
Sbjct: 1534 PINEFHWTLVS 1544


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,329
Number of Sequences: 438
Number of extensions: 3764
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)