Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14d20
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    31   0.20 
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    28   1.1  
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    28   1.4  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    27   1.9  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.3  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    27   3.3  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    26   4.3  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   9.9  

>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +2

Query: 554 EKQDSETIYKQLLQLQEENVKLKSENGKLIEK 649
           EK  SET+ ++   L++EN  LK ENG L EK
Sbjct: 96  EKLASETLREKTQLLEKENGALKVENGYLYEK 127


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = -2

Query: 615 LTFSSCS*SNCL*IVSESCFSYILSFIIKLSGTFTCKLSFISLFAMPGNGDEILLHFSFN 436
           LT S  +  N L +  +  F+  + F+I L  +F   + ++ L A P    E   HFS  
Sbjct: 346 LTLSDIA-KNYLLVPMKLLFTEPICFLITLYSSFVYAILYLLLEAYPIIFGE-KRHFSMG 403

Query: 435 CVDIEFVGFNVGV 397
             ++ ++G  VGV
Sbjct: 404 VAELPYIGLLVGV 416


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 437 LKEKCNRISSPLPGIANKLMKDNLQVNVPDNLIMNDKIYEKQDSETIYKQLLQLQEENVK 616
           + +K +++ S L  I  K   D L+ NV       +    K+D + ++ + L+    N +
Sbjct: 91  IHKKISQVQSLLKIIEKKCSSDFLEANVKSQFTTCENKDSKEDYQILHNKRLEYVSFNDE 150

Query: 617 LKS-ENGK 637
           LKS E G+
Sbjct: 151 LKSLETGQ 158


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = -2

Query: 588 NCL*IVSESCFSYILSFIIKLSGTFTCKLSFISLFAMPGNGDEILLHFSFNCVDIEFVGF 409
           N L +  +  F+  + F+I L  +F   + ++ L A P    E   HFS    ++ ++G 
Sbjct: 353 NYLLVPMKLLFTEPIVFLITLYSSFVYAILYLLLEAYPIIFSE-KRHFSMGVAELPYIGL 411

Query: 408 NVGV 397
            VGV
Sbjct: 412 LVGV 415


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 358 TASTAKHFQKHIQNPNIESHEFNIYTIKRKMQQNFIPIT 474
           T++  K+ + H+QNPN  S +F +   +R  + + + +T
Sbjct: 295 TSTLEKYKKMHLQNPNNFSLDFTLSIFERLRKDSSLQLT 333


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 524 DNLIMNDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIE 646
           D L+M  +  +  D ET+  QL  LQEE    + E  +LI+
Sbjct: 416 DKLLMQQQSQQTGDLETLRLQLQALQEELRVEREERQQLIQ 456


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
 Frame = +2

Query: 437 LKEKCNRISSPLPGIANKLMKDNLQVN--VPDNLIMNDKI--YEKQDSETI-YKQLLQLQ 601
           L +K   I   L     K M+D L++     +N ++  +I   ++  SE    KQ+LQLQ
Sbjct: 127 LIQKLEIIEKKLDKSFRKNMEDELRITRLASENNVLISRIDRTKRHFSELFTQKQMLQLQ 186

Query: 602 EENV-----KLKSENGKLIEK 649
            EN      K+K EN +L ++
Sbjct: 187 NENFKDDYEKIKEENKRLYKE 207


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 503  NLQVNVPDNLIMNDKIYEKQDSETIYKQLLQLQEENVKLKSENGKLIEKM 652
            NL+V   D L+   K + + +++  ++QLL L E    L   N  LI+ +
Sbjct: 908  NLEVQTLDRLLQKVKEHSEDNTKEKHQQLLDLLE---SLVGNNDNLIDSI 954


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,701
Number of Sequences: 5004
Number of extensions: 52700
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)