Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14d20
(673 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 26 0.38
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 25 0.50
DQ855486-1|ABH88173.1| 104|Apis mellifera chemosensory protein ... 23 3.5
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.1
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 8.1
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 8.1
>AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein
protein.
Length = 411
Score = 25.8 bits (54), Expect = 0.38
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 134 GERKKAKLDWSTTDHNFPMS--QNTSVKDTQFTQSNSWGN 247
GE K W+ ++NFP +NT + + + + N+ N
Sbjct: 15 GEEIKTIYSWNVIEYNFPNDNIRNTLISNGDYIEENNMPN 54
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 25.4 bits (53), Expect = 0.50
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 386 NIFKTPTLNPTNSISTQLKEKCNRISSPLPGIANKLMKDN 505
N FKT T P N+ K I+ PG+ K + DN
Sbjct: 136 NAFKTLTQEPKNTNKFLEKGPVALINELYPGVVYKCVSDN 175
>DQ855486-1|ABH88173.1| 104|Apis mellifera chemosensory protein 5
protein.
Length = 104
Score = 22.6 bits (46), Expect = 3.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 437 LKEKCNRISSPLPGIANKLMKDNLQVNVP 523
L CNR +S GIAN L+ +Q N P
Sbjct: 61 LNNHCNRCTSRQIGIANTLI-PFMQQNYP 88
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +2
Query: 152 KLDWSTTDHNFPMSQNTSVKDTQFTQSNSW 241
KL+W + + S+ VKD + T + W
Sbjct: 40 KLEWVDYNLQWNESEYGGVKDLRITPNKLW 69
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +2
Query: 152 KLDWSTTDHNFPMSQNTSVKDTQFTQSNSW 241
KL+W + + S+ VKD + T + W
Sbjct: 40 KLEWVDYNLQWNESEYGGVKDLRITPNKLW 69
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +2
Query: 152 KLDWSTTDHNFPMSQNTSVKDTQFTQSNSW 241
KL+W + + S+ VKD + T + W
Sbjct: 40 KLEWVDYNLQWNESEYGGVKDLRITPNKLW 69
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +2
Query: 152 KLDWSTTDHNFPMSQNTSVKDTQFTQSNSW 241
KL+W + + S+ VKD + T + W
Sbjct: 40 KLEWVDYNLQWNESEYGGVKDLRITPNKLW 69
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +2
Query: 152 KLDWSTTDHNFPMSQNTSVKDTQFTQSNSW 241
KL+W + + S+ VKD + T + W
Sbjct: 40 KLEWVDYNLQWNESEYGGVKDLRITPNKLW 69
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +2
Query: 152 KLDWSTTDHNFPMSQNTSVKDTQFTQSNSW 241
KL+W + + S+ VKD + T + W
Sbjct: 40 KLEWVDYNLQWNESEYGGVKDLRITPNKLW 69
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +2
Query: 152 KLDWSTTDHNFPMSQNTSVKDTQFTQSNSW 241
KL+W + + S+ VKD + T + W
Sbjct: 108 KLEWVDYNLQWNESEYGGVKDLRITPNKLW 137
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +2
Query: 152 KLDWSTTDHNFPMSQNTSVKDTQFTQSNSW 241
KL+W + + S+ VKD + T + W
Sbjct: 108 KLEWVDYNLQWNESEYGGVKDLRITPNKLW 137
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.4 bits (43), Expect = 8.1
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 311 GYRCRHFHR 285
GYRCR HR
Sbjct: 206 GYRCRTMHR 214
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.4 bits (43), Expect = 8.1
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 311 GYRCRHFHR 285
GYRCR HR
Sbjct: 206 GYRCRTMHR 214
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,643
Number of Sequences: 438
Number of extensions: 3468
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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