Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14d15
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    36   0.005
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    31   0.19 
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    29   0.77 
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     27   3.1  
SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.2  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.5  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   9.5  

>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +1

Query: 346 QDALLYYHEVTGLPWWAAIVTSTILVRTLMTFPFSIYQNYILAKVENISLELKDLVNDLK 525
           Q+ L   H  +GLPWWA+I    + +R +  FP  +      AK+  I+ ++ + ++ L 
Sbjct: 101 QNGLNTLHIWSGLPWWASIAACAVAMR-IAVFPIMLKMMKTSAKLAIINPKVAEHMSVLS 159

Query: 526 KETAIAKKSLNL-TDKQCAILYK 591
           K  A     L +    Q   LYK
Sbjct: 160 KAKAEGNSELMMQATTQIQNLYK 182


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 27/90 (30%), Positives = 46/90 (51%)
 Frame = +1

Query: 379 GLPWWAAIVTSTILVRTLMTFPFSIYQNYILAKVENISLELKDLVNDLKKETAIAKKSLN 558
           G PWW +I+ +T+ VR  +T         ++A   N S +L  +  ++KKE   A K+  
Sbjct: 83  GAPWWVSIILTTLGVRLALT-------PVMIASFRN-STKLSVIQPEMKKELE-AIKTAK 133

Query: 559 LTDKQCAILYKRSLKKQWVNLIERDNCHPF 648
           L + Q A L + S+  + + L  + N +PF
Sbjct: 134 LDNDQLA-LNQHSIALRGIYL--KHNVNPF 160


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 382 DLLLHDNIIMHLELTKLGSYLIYCCIFALAI 290
           D++L+   +M +     GSY IY C  AL +
Sbjct: 148 DMILNFTTLMTIYFASCGSYAIYACCMALTV 178


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +1

Query: 442  PFSIYQNYILAKVENISLELKDLVNDLK 525
            PFS++Q +++   +N  + L+DLV +L+
Sbjct: 977  PFSLFQEFMVHLKDNSPVTLQDLVKNLE 1004


>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +1

Query: 448 SIYQNYILAKVENISLELKDLVNDLKKETAIAKKSL 555
           +++Q  I  + + +S  L+D VNDL K ++  ++ +
Sbjct: 20  NVFQPVIDERTKRLSAHLRDQVNDLTKSSSSKEEGI 55


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 238 PRILFLIYLFVHFFLNLYHK 179
           PR  FL+YL   + +NL+H+
Sbjct: 147 PRQKFLLYLLEKYQINLFHR 166


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -3

Query: 364 NIIMHLELTKLGSYLIYCCIFALAISRLQQLIDFSVAEQRIQPRILFLIYLFVH 203
           ++I   EL   G+YL+Y     L ISR   L   S  + R   +I   I +F++
Sbjct: 553 HVISGRELHSHGTYLVYLNGAILGISRYPSLFVASFRKLRRSGKISPFIGIFIN 606


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,730
Number of Sequences: 5004
Number of extensions: 38103
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)