Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14d15
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0111 + 884501-884970,885069-885147,885530-885574,885838-88...    43   2e-04
10_08_0659 + 19647037-19647464,19647569-19647659,19648998-196490...    39   0.003
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358...    38   0.005
02_05_0061 + 25506648-25509399,25509564-25509901,25510392-255105...    27   9.9  

>03_01_0111 +
           884501-884970,885069-885147,885530-885574,885838-885903,
           886362-886420,886626-886701,886825-886956,887046-887153,
           887679-887733,887822-888042
          Length = 436

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
 Frame = +1

Query: 367 HEVTGLPWWAAIVTSTILVRTLMTFPFSIYQNYILA---KVENISLELKD-----LVNDL 522
           H +TGL WWA I  +++L+RTL T P  + Q    A   ++E I+LE++      +  + 
Sbjct: 150 HSLTGLNWWACIALTSLLIRTL-TVPLLLNQMKATAMRPEIEAINLEMRTISSTRIAGNE 208

Query: 523 KKETAIAKKSLNLTDKQCAILYKRSL 600
           K  T +  +    TD Q  +  KR L
Sbjct: 209 KSSTRVTDEGSMSTDPQSMLEGKRKL 234


>10_08_0659 +
           19647037-19647464,19647569-19647659,19648998-19649039,
           19649179-19649237,19649559-19649634,19649735-19649866,
           19650251-19650358,19651040-19651094,19651187-19651437
          Length = 413

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +1

Query: 346 QDALLYYHEVTGLPWWAAIVTSTILVRTLMTFPFSIYQNYILAKVENISLELKDLVNDL 522
           Q  + Y H  TGL WWA I  +T+L+R+  T P  + Q     K+  I  E++ +  ++
Sbjct: 129 QHVIDYIHTFTGLNWWACIALATVLIRS-ATVPLLVNQLKATQKLNAIRPEMEAIKEEM 186


>06_01_0501 -
           3587390-3587528,3587922-3588031,3588122-3588187,
           3588293-3588410,3588499-3588554,3588647-3588766,
           3588937-3589035,3589443-3589490,3589534-3589545,
           3590353-3590418,3591412-3591471,3592061-3592162,
           3592405-3592426,3592959-3593041,3593166-3593293,
           3593775-3593881,3594376-3594845
          Length = 601

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = +1

Query: 349 DALLYYHEVTGLPWWAAIVTSTILVRTLMTFPFSIYQNYILAKVENISLEL 501
           D L  +H +TG+PWW  I  ST+ +R L+  P  I Q    AK+  +  EL
Sbjct: 144 DILDGFHNLTGIPWWITISLSTVAMR-LLILPVLITQIKKAAKIGKLLPEL 193


>02_05_0061 +
           25506648-25509399,25509564-25509901,25510392-25510593,
           25510779-25510854,25512036-25512294
          Length = 1208

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 367 HEVTGLPWWAAIVTSTILVRTLMTFPFSIYQNYILAKVENISLELKDLVN 516
           H V GL     +V +TI + +L+ F  + Y+N +      +S+    LV+
Sbjct: 673 HRVPGLAIVVPLVATTICILSLLLFFHAWYKNRLTKSPSTMSMRAHQLVS 722


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,856,150
Number of Sequences: 37544
Number of extensions: 195534
Number of successful extensions: 410
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)