Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14d15
(654 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY069618-1|AAL39763.1| 351|Drosophila melanogaster LD38503p pro... 128 7e-30
AE014296-1579|AAF50323.1| 351|Drosophila melanogaster CG4942-PA... 128 7e-30
AF145596-1|AAD38571.1| 441|Drosophila melanogaster BcDNA.GH0222... 36 0.064
AE014296-1858|AAN11911.1| 441|Drosophila melanogaster CG6404-PB... 36 0.064
AE014296-1857|AAF50127.2| 441|Drosophila melanogaster CG6404-PA... 36 0.064
BT004470-1|AAO42634.1| 1248|Drosophila melanogaster SD07139p pro... 30 3.2
AE014297-2960|AAF55869.3| 1251|Drosophila melanogaster CG5874-PA... 30 3.2
BT023779-1|AAZ41788.1| 380|Drosophila melanogaster LD24968p pro... 29 4.2
AY089667-1|AAL90405.1| 321|Drosophila melanogaster RH38929p pro... 29 4.2
AE014298-881|AAF46157.1| 380|Drosophila melanogaster CG3847-PA ... 29 4.2
BT015206-1|AAT94435.1| 932|Drosophila melanogaster RE62451p pro... 28 9.6
AF162793-1|AAD50780.1| 1257|Drosophila melanogaster XPG variant ... 28 9.6
AF162792-1|AAD50779.1| 1236|Drosophila melanogaster XPG protein. 28 9.6
AF144092-1|AAD38375.1| 1236|Drosophila melanogaster nucleotide e... 28 9.6
AE014134-1515|AAO41169.1| 1236|Drosophila melanogaster CG10890-P... 28 9.6
AE014134-1514|AAF52678.1| 1236|Drosophila melanogaster CG10890-P... 28 9.6
AE014134-1513|AAG22424.1| 1257|Drosophila melanogaster CG10890-P... 28 9.6
>AY069618-1|AAL39763.1| 351|Drosophila melanogaster LD38503p
protein.
Length = 351
Score = 128 bits (309), Expect = 7e-30
Identities = 55/102 (53%), Positives = 76/102 (74%)
Frame = +1
Query: 346 QDALLYYHEVTGLPWWAAIVTSTILVRTLMTFPFSIYQNYILAKVENISLELKDLVNDLK 525
QD L+ H+ +GLPWWA+IV ST L R+++T P +IYQ+ I A++E I+LE+ +V +LK
Sbjct: 72 QDVLIKIHDYSGLPWWASIVLSTFLFRSVVTLPLTIYQHKITARIEKIALEMPAIVEELK 131
Query: 526 KETAIAKKSLNLTDKQCAILYKRSLKKQWVNLIERDNCHPFK 651
KE A+AK ++KQ I+Y+RS+KKQW NLI RDNCHP K
Sbjct: 132 KEAAMAKHKFKWSEKQTQIVYRRSIKKQWQNLIVRDNCHPMK 173
>AE014296-1579|AAF50323.1| 351|Drosophila melanogaster CG4942-PA
protein.
Length = 351
Score = 128 bits (309), Expect = 7e-30
Identities = 55/102 (53%), Positives = 76/102 (74%)
Frame = +1
Query: 346 QDALLYYHEVTGLPWWAAIVTSTILVRTLMTFPFSIYQNYILAKVENISLELKDLVNDLK 525
QD L+ H+ +GLPWWA+IV ST L R+++T P +IYQ+ I A++E I+LE+ +V +LK
Sbjct: 72 QDVLIKIHDYSGLPWWASIVLSTFLFRSVVTLPLTIYQHKITARIEKIALEMPAIVEELK 131
Query: 526 KETAIAKKSLNLTDKQCAILYKRSLKKQWVNLIERDNCHPFK 651
KE A+AK ++KQ I+Y+RS+KKQW NLI RDNCHP K
Sbjct: 132 KEAAMAKHKFKWSEKQTQIVYRRSIKKQWQNLIVRDNCHPMK 173
>AF145596-1|AAD38571.1| 441|Drosophila melanogaster BcDNA.GH02220
protein.
Length = 441
Score = 35.5 bits (78), Expect = 0.064
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 346 QDALLYYHEVTGLPWWAAIVTSTILVRTLMTFPFSIYQNYILAKVEN 486
Q+ L + H +PWW I T+ VRT++ FP I AK+ N
Sbjct: 138 QNCLEFLHCTWDIPWWGTIAIGTLAVRTII-FPLVILAQRNSAKMNN 183
>AE014296-1858|AAN11911.1| 441|Drosophila melanogaster CG6404-PB,
isoform B protein.
Length = 441
Score = 35.5 bits (78), Expect = 0.064
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 346 QDALLYYHEVTGLPWWAAIVTSTILVRTLMTFPFSIYQNYILAKVEN 486
Q+ L + H +PWW I T+ VRT++ FP I AK+ N
Sbjct: 138 QNCLEFLHCTWDIPWWGTIAIGTLAVRTII-FPLVILAQRNSAKMNN 183
>AE014296-1857|AAF50127.2| 441|Drosophila melanogaster CG6404-PA,
isoform A protein.
Length = 441
Score = 35.5 bits (78), Expect = 0.064
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 346 QDALLYYHEVTGLPWWAAIVTSTILVRTLMTFPFSIYQNYILAKVEN 486
Q+ L + H +PWW I T+ VRT++ FP I AK+ N
Sbjct: 138 QNCLEFLHCTWDIPWWGTIAIGTLAVRTII-FPLVILAQRNSAKMNN 183
>BT004470-1|AAO42634.1| 1248|Drosophila melanogaster SD07139p
protein.
Length = 1248
Score = 29.9 bits (64), Expect = 3.2
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 412 TILVRTLMTFPFSIYQNYILAKVENISLELKDLVNDLKKETAIAKKS-LNLTDKQCAILY 588
++L T+ TFP + N ++ E+ D+VNDL+K + K S L + +C L
Sbjct: 91 SMLAETMKTFPATSSLNTEISDYEDTRPIFIDMVNDLRK--LVTKHSDLGMLPLECQYLN 148
Query: 589 KRSL 600
K +L
Sbjct: 149 KNAL 152
>AE014297-2960|AAF55869.3| 1251|Drosophila melanogaster CG5874-PA
protein.
Length = 1251
Score = 29.9 bits (64), Expect = 3.2
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 412 TILVRTLMTFPFSIYQNYILAKVENISLELKDLVNDLKKETAIAKKS-LNLTDKQCAILY 588
++L T+ TFP + N ++ E+ D+VNDL+K + K S L + +C L
Sbjct: 91 SMLAETMKTFPATSSLNTEISDYEDTRPIFIDMVNDLRK--LVTKHSDLGMLPLECQYLN 148
Query: 589 KRSL 600
K +L
Sbjct: 149 KNAL 152
>BT023779-1|AAZ41788.1| 380|Drosophila melanogaster LD24968p
protein.
Length = 380
Score = 29.5 bits (63), Expect = 4.2
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 121 KRLFIVHSSAYLCRRNFSVICDIG-LKKSVQINKSRIKYEVVSSVRQQR 264
K++ + C +NF+V+ D+G +K+ + R KY ++RQ +
Sbjct: 290 KKVVVKEFQCAFCSQNFTVVFDVGQVKRRYACDACRDKYSNAEALRQHK 338
>AY089667-1|AAL90405.1| 321|Drosophila melanogaster RH38929p
protein.
Length = 321
Score = 29.5 bits (63), Expect = 4.2
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 121 KRLFIVHSSAYLCRRNFSVICDIG-LKKSVQINKSRIKYEVVSSVRQQR 264
K++ + C +NF+V+ D+G +K+ + R KY ++RQ +
Sbjct: 231 KKVVVKEFQCAFCSQNFTVVFDVGQVKRRYACDACRDKYSNAEALRQHK 279
>AE014298-881|AAF46157.1| 380|Drosophila melanogaster CG3847-PA
protein.
Length = 380
Score = 29.5 bits (63), Expect = 4.2
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 121 KRLFIVHSSAYLCRRNFSVICDIG-LKKSVQINKSRIKYEVVSSVRQQR 264
K++ + C +NF+V+ D+G +K+ + R KY ++RQ +
Sbjct: 290 KKVVVKEFQCAFCSQNFTVVFDVGQVKRRYACDACRDKYSNAEALRQHK 338
>BT015206-1|AAT94435.1| 932|Drosophila melanogaster RE62451p
protein.
Length = 932
Score = 28.3 bits (60), Expect = 9.6
Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +1
Query: 484 NISLELKDLVNDLKKETAIAKK-SLNLTDKQ 573
N+ +L+ ++NDLKK+TA K LN+ +++
Sbjct: 607 NLKPDLESILNDLKKQTAAVKDIQLNVNEEE 637
>AF162793-1|AAD50780.1| 1257|Drosophila melanogaster XPG variant
protein.
Length = 1257
Score = 28.3 bits (60), Expect = 9.6
Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +1
Query: 484 NISLELKDLVNDLKKETAIAKK-SLNLTDKQ 573
N+ +L+ ++NDLKK+TA K LN+ +++
Sbjct: 628 NLKPDLESILNDLKKQTAAVKDIQLNVNEEE 658
>AF162792-1|AAD50779.1| 1236|Drosophila melanogaster XPG protein.
Length = 1236
Score = 28.3 bits (60), Expect = 9.6
Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +1
Query: 484 NISLELKDLVNDLKKETAIAKK-SLNLTDKQ 573
N+ +L+ ++NDLKK+TA K LN+ +++
Sbjct: 607 NLKPDLESILNDLKKQTAAVKDIQLNVNEEE 637
>AF144092-1|AAD38375.1| 1236|Drosophila melanogaster nucleotide
excision repair proteinMUS201 protein.
Length = 1236
Score = 28.3 bits (60), Expect = 9.6
Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +1
Query: 484 NISLELKDLVNDLKKETAIAKK-SLNLTDKQ 573
N+ +L+ ++NDLKK+TA K LN+ +++
Sbjct: 607 NLKPDLESILNDLKKQTAAVKDIQLNVNEEE 637
>AE014134-1515|AAO41169.1| 1236|Drosophila melanogaster CG10890-PC,
isoform C protein.
Length = 1236
Score = 28.3 bits (60), Expect = 9.6
Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +1
Query: 484 NISLELKDLVNDLKKETAIAKK-SLNLTDKQ 573
N+ +L+ ++NDLKK+TA K LN+ +++
Sbjct: 607 NLKPDLESILNDLKKQTAAVKDIQLNVNEEE 637
>AE014134-1514|AAF52678.1| 1236|Drosophila melanogaster CG10890-PB,
isoform B protein.
Length = 1236
Score = 28.3 bits (60), Expect = 9.6
Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +1
Query: 484 NISLELKDLVNDLKKETAIAKK-SLNLTDKQ 573
N+ +L+ ++NDLKK+TA K LN+ +++
Sbjct: 607 NLKPDLESILNDLKKQTAAVKDIQLNVNEEE 637
>AE014134-1513|AAG22424.1| 1257|Drosophila melanogaster CG10890-PA,
isoform A protein.
Length = 1257
Score = 28.3 bits (60), Expect = 9.6
Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +1
Query: 484 NISLELKDLVNDLKKETAIAKK-SLNLTDKQ 573
N+ +L+ ++NDLKK+TA K LN+ +++
Sbjct: 628 NLKPDLESILNDLKKQTAAVKDIQLNVNEEE 658
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,818,934
Number of Sequences: 53049
Number of extensions: 371219
Number of successful extensions: 845
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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