Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14d10
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    30   0.27 
SPAC12G12.08 |mrpl6||mitochondrial ribosomal protein subunit L16...    26   4.4  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    26   4.4  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.8  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    25   5.8  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   7.7  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   7.7  

>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 120 RNTKARQVCIATSPLNISEASISKQSEPAKKK 215
           +N+K+R V + +SP N+   ++S   +  KKK
Sbjct: 561 KNSKSRNVSVFSSPFNVPSFTVSSSDQVQKKK 592


>SPAC12G12.08 |mrpl6||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 213

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 156 MWQYTLALLSCSCAGATSIALSLLHLFSSGWTS*LQDG 43
           MW  T A+L+ +  G T    S++ L   G+ + L DG
Sbjct: 99  MWGTTRAILANNVKGVTMYWQSIIKLVGIGYRTSLNDG 136


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 276 DIKYYYKNVLIRIS-KKYIEIYATIIKNIIKMKTRFEVNFL 395
           D+K+++ +    ++ KKY+ +Y  +   I  +K   EVN L
Sbjct: 147 DVKWFHNHQYFAVAQKKYVYVYDNMGTEIHCLKRHIEVNAL 187


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 350 YNSGVNFNIFFRYPNQYIFIVIFDVHLGPSTLWRVGNPLCP 228
           YN  ++   F + PN++I +        PS   R+   LCP
Sbjct: 107 YNENLDQRSFSKTPNKHIEVKNLKDLCSPSHSGRISKSLCP 147


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 35  IPLPSCSQDVQPLENRCSNDKAIEVAPAQ 121
           +PLPS  ++ +PLE R  +D    +A  Q
Sbjct: 472 VPLPSEMKEAEPLEGRYPSDHVALMANVQ 500


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 162 LNISEASISKQSEPAKKKLLFLRTKGIAHSP*CARPKMDIK 284
           L+I E S+SK+SEP+   +L   T   + S     P   IK
Sbjct: 582 LSILEGSVSKRSEPSMDSILVQATPRKSSSVITELPDTPIK 622


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 106 FDSFVITTPIFKWLDILTTRWQRYNNTTHLIF 11
           FDS  +T  +FK L++L   +++ ++   +IF
Sbjct: 336 FDSTDVTDKVFKLLELLKATYRKSDSVRTVIF 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,801
Number of Sequences: 5004
Number of extensions: 42793
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)