Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14d10
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52002-5|AAB37729.2|  534|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical ...    29   3.1  
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U52002-5|AAB37729.2|  534|Caenorhabditis elegans Hypothetical
           protein F08B4.5 protein.
          Length = 534

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 229 LRNNSFFFAGSDCLLILASDMLRGDVAIHTCLAFVFLCWSYFDSFVITTPIFKWL 65
           L +N  +F G D +    SD LR  +A     + VFL   + D   +   +FK L
Sbjct: 243 LSSNENWFGGDDKIAFRCSDRLRSALAKQEDTSLVFLSDVFLDDKKVMKAVFKLL 297


>AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical
           protein R119.5 protein.
          Length = 659

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 434 KFLKYLTIRHLFI*KINLKTSFHFYYIFYNSGVNFNIFFRY 312
           +FLK L   + F  K+ +KT F+F  I  ++ V+  IF  Y
Sbjct: 427 RFLKILEFNNFFRLKLRIKTIFNFLKIKISNCVDSEIFHFY 467


>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical protein
            R08E3.1b protein.
          Length = 1465

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 407  HLFI*KINLKTSFHFYYIFYNSGVNFNIFFRY 312
            +L + K+N   ++HF   FY+S  N  +F+ +
Sbjct: 1431 YLTLLKLNTTNAYHFVVPFYDSADNVLVFYTF 1462


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,361,209
Number of Sequences: 27780
Number of extensions: 237359
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)