Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14d10
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   3.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   8.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 244 AIPFVLRNNSFFFAGSDCLLILA 176
           AIP+ +  ++ FF  +  LL++A
Sbjct: 139 AIPYAVTKSAMFFFAATSLLVVA 161


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 196 DCLLILASDMLRGDVAIHTCLA 131
           D  L++ S   +GD  ++TC A
Sbjct: 570 DGTLVITSVQKKGDAGVYTCSA 591


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 196 DCLLILASDMLRGDVAIHTCLA 131
           D  L++ S   +GD  ++TC A
Sbjct: 570 DGTLVITSVQKKGDAGVYTCSA 591


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 338 VNFNIFFRYPNQYIFIV 288
           ++ NI+ R  N+YI+IV
Sbjct: 360 ISSNIYERQNNEYIWIV 376


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 121 LCWSYFDSFVITTPI 77
           LCW+  +  + +TPI
Sbjct: 211 LCWTQDEDIICSTPI 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,431
Number of Sequences: 438
Number of extensions: 3135
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)