Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14d05
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    47   2e-06
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    46   5e-06
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    33   0.031
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    30   0.29 
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    29   0.38 
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    28   1.2  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   3.6  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   4.7  

>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 30/131 (22%), Positives = 66/131 (50%)
 Frame = +1

Query: 193 AESTKRKVQYLAGICASLTFMFTGATLAWPSPAIPKLSSGEAGVKITDEQISWVVSLHGL 372
           AE     +  L+ + A ++ +  G      S A+  L S + G  ++  Q   + S    
Sbjct: 74  AEKISSWIWVLSAV-AGISGLLFGYDTGVISGALAVLGS-DLGHVLSSGQKELITSATSF 131

Query: 373 GALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGASTGVIA 552
            AL+ +     L + VGR++ +  + A  ++G++++  S+   +M + RF++G   G+ +
Sbjct: 132 AALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTS 191

Query: 553 VVTMIYVTEIA 585
           ++  +Y+TE+A
Sbjct: 192 LIVPMYITELA 202


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 45.6 bits (103), Expect = 5e-06
 Identities = 28/101 (27%), Positives = 54/101 (53%)
 Frame = +1

Query: 283 SPAIPKLSSGEAGVKITDEQISWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGI 462
           S A+  + +   G ++T+    ++ S   LGALLG      L +  GR+  I ++S   I
Sbjct: 109 SGALVVIGTSLGGHELTNGGKEFITSATSLGALLGGIIAGALADFFGRKPVIAIASIIII 168

Query: 463 LGAIMIFFSKMPVVMYLARFLMGASTGVIAVVTMIYVTEIA 585
           +G+I+   +     M + RF++G   G+ +++  +Y++EIA
Sbjct: 169 VGSIVQVTAHHLWHMIVGRFVIGWGVGIASLIIPLYLSEIA 209


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 33.1 bits (72), Expect = 0.031
 Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 6/74 (8%)
 Frame = +1

Query: 382 LGSYGGQLLN----ERVGRRKTIFVSSAPGILGAIMIFFSKMP--VVMYLARFLMGASTG 543
           +GS+ G LL+    +++G+R +I V +   ++G I+I  + +P  V + +A+   G S G
Sbjct: 35  VGSFFGCLLSSPVADKIGKRLSIIVWTTVYLIG-IIIQVTTVPSWVQILVAKIWTGLSIG 93

Query: 544 VIAVVTMIYVTEIA 585
            ++V+T  Y +E+A
Sbjct: 94  ALSVITPGYQSEVA 107


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 555 HGNYARRRPHEKTCKVHHNRHFTKKYHNRT*YSWGRRNKN 436
           HG++ R  P+      HH RH T  YH++    + RR ++
Sbjct: 149 HGSHRRHEPYRTHLSRHH-RHSTTNYHSKRDDRYERRREH 187


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -2

Query: 564 HCHHGNYARRRPHEKTCKVHHN-RHFTKKYHNR 469
           HCHHG + R  PH  T   H   +H    +H R
Sbjct: 286 HCHHGKFPRPIPHNGTKPDHKPWKHEEHCHHGR 318



 Score = 28.7 bits (61), Expect = 0.67
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 12/45 (26%)
 Frame = -2

Query: 564 HCHHGNYARRRP------------HEKTCKVHHNRHFTKKYHNRT 466
           HCHHG + R  P            HE+ C  HH++      HN T
Sbjct: 313 HCHHGRFPRPVPHNGTKPDHKPWKHEEHCSCHHDKFSRPVPHNGT 357



 Score = 28.3 bits (60), Expect = 0.89
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 564 HCHHGNYARRRPHEKTCKVH 505
           HCHHG + R  PH  T   H
Sbjct: 201 HCHHGKFPRPVPHNGTKPDH 220



 Score = 28.3 bits (60), Expect = 0.89
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 564 HCHHGNYARRRPHEKTCKVH 505
           HCHHG + R  PH  T   H
Sbjct: 369 HCHHGKFLRPVPHNVTKPDH 388



 Score = 28.3 bits (60), Expect = 0.89
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 564 HCHHGNYARRRPHEKTCKVH 505
           HCHHG + R  PH  T   H
Sbjct: 396 HCHHGKFPRPVPHNGTKPDH 415


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 14/124 (11%)
 Frame = +1

Query: 91  IVEIGDKTPLFA*SVALKILFWHFS----YILITISEMAESTKRKVQYLAGICASLT--- 249
           I EI +   + A S+AL  L W+ +    Y   T++++A    +K  Y+   C  +    
Sbjct: 28  IFEINNSFLICAVSIALNPLLWNIAARSEYNHKTLTKLANGDSKKACYMLAACIFVAGIV 87

Query: 250 --FMFTGATLAWPSPAI--PKLSSGEAGVKITDEQISWVVSLHGLGAL---LGSYGGQLL 408
              ++  A    P+  I    L  G A +      +  + S++ LG +   LG Y G LL
Sbjct: 88  RDLIYQNALKQQPTLGIFMNPLVQGIAKLIFCFGSVLVLSSMYKLGLVGTYLGDYFGFLL 147

Query: 409 NERV 420
            ERV
Sbjct: 148 PERV 151


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 338 SSVIFTPASPLDNFGIAGEGHANVAPVNINVNEAQIPAKYCTFLFVDSAIS 186
           +S+ F P SPL N+        N    +I   E +I  ++C F F  + +S
Sbjct: 386 TSIFFRPYSPLRNYTEVQASFYNSVIADIESGEYEIAIEHC-FHFSQTVLS 435


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 196 ESTKRKVQYLAGICASLT 249
           E+TKR +QYLA I +S T
Sbjct: 178 ENTKRIIQYLAAIASSTT 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,708
Number of Sequences: 5004
Number of extensions: 53132
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)