Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14d05
(592 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical ... 48 7e-06
AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical ... 46 2e-05
Z81099-3|CAB03186.3| 490|Caenorhabditis elegans Hypothetical pr... 44 8e-05
U41023-1|AAA82340.1| 569|Caenorhabditis elegans Hypothetical pr... 43 1e-04
U12965-9|AAA20605.3| 522|Caenorhabditis elegans Hypothetical pr... 41 8e-04
U12965-7|AAY86205.1| 528|Caenorhabditis elegans Hypothetical pr... 41 8e-04
Z99270-1|CAB16470.4| 500|Caenorhabditis elegans Hypothetical pr... 40 0.002
AL021497-2|CAA16400.1| 606|Caenorhabditis elegans Hypothetical ... 40 0.002
U28735-4|AAF99953.1| 488|Caenorhabditis elegans Hypothetical pr... 39 0.002
Z46381-4|CAA86519.2| 604|Caenorhabditis elegans Hypothetical pr... 38 0.005
U28737-2|AAA68272.1| 455|Caenorhabditis elegans Patterned expre... 36 0.016
AL021497-3|CAA16405.1| 613|Caenorhabditis elegans Hypothetical ... 35 0.038
Z66567-7|CAC42386.3| 414|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z66567-5|CAA91492.4| 757|Caenorhabditis elegans Hypothetical pr... 33 0.15
AF199013-1|AAG28557.1| 414|Caenorhabditis elegans organic catio... 33 0.15
Z66522-7|CAA91409.2| 472|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z66520-13|CAA91392.2| 472|Caenorhabditis elegans Hypothetical p... 33 0.20
Z99281-14|CAB16524.1| 532|Caenorhabditis elegans Hypothetical p... 30 1.4
Z92807-5|CAB07265.1| 480|Caenorhabditis elegans Hypothetical pr... 30 1.4
AL021482-5|CAA16342.1| 480|Caenorhabditis elegans Hypothetical ... 30 1.4
Z79602-1|CAB01888.3| 508|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z68882-3|CAA93106.2| 568|Caenorhabditis elegans Hypothetical pr... 29 2.5
AC090999-19|AAK26156.1| 575|Caenorhabditis elegans Hypothetical... 29 2.5
Z71262-4|CAA95814.1| 775|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z69794-1|CAA93679.2| 663|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z68296-1|CAA92589.2| 520|Caenorhabditis elegans Hypothetical pr... 28 5.7
U46670-3|AAP46279.1| 312|Caenorhabditis elegans Nuclear hormone... 28 5.7
U46670-2|AAC48174.4| 440|Caenorhabditis elegans Nuclear hormone... 28 5.7
U46670-1|AAP46277.1| 445|Caenorhabditis elegans Nuclear hormone... 28 5.7
AY204166-1|AAO39170.1| 436|Caenorhabditis elegans nuclear recep... 28 5.7
AY204165-1|AAO39169.1| 445|Caenorhabditis elegans nuclear recep... 28 5.7
AY204164-1|AAO39168.1| 440|Caenorhabditis elegans nuclear recep... 28 5.7
AY204163-1|AAO39167.1| 440|Caenorhabditis elegans nuclear recep... 28 5.7
AC024843-10|AAF60845.2| 526|Caenorhabditis elegans Hypothetical... 28 5.7
Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical p... 27 7.5
Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical p... 27 7.5
AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector ... 27 7.5
>AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical
protein C35A11.4 protein.
Length = 515
Score = 47.6 bits (108), Expect = 7e-06
Identities = 29/85 (34%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Frame = +1
Query: 346 SWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSK-MPVV-MYLA- 516
S+VV++ LGAL GS+ +L+ + +GR+ +++S A G+L M SK +P+ +Y+A
Sbjct: 64 SFVVAILFLGALAGSFSIRLIADWIGRKNGLYISIAVGVLAGGMSIASKFIPLFELYIAS 123
Query: 517 RFLMGASTGVIAVVTMIYVTEIADK 591
R +MG S V ++ ++++E + K
Sbjct: 124 RIVMGWSVSVSLGLSALFLSEASPK 148
>AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical
protein R09B5.11 protein.
Length = 516
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/84 (27%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Frame = +1
Query: 346 SWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKM----PVVMYL 513
S VS+ +G + GS+ L ++ GR+ T+ ++ +L A+ + SK+ P++++
Sbjct: 101 SVAVSMFSVGGMFGSFCSGFLADKFGRKSTLLYNNILALLAAVCLSTSKLFNFYPMIVF- 159
Query: 514 ARFLMGASTGVIAVVTMIYVTEIA 585
RFL+G + G+ + + +++TE+A
Sbjct: 160 GRFLVGLNCGITSGLVPMFLTELA 183
>Z81099-3|CAB03186.3| 490|Caenorhabditis elegans Hypothetical
protein K08F9.1 protein.
Length = 490
Score = 44.0 bits (99), Expect = 8e-05
Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Frame = +1
Query: 346 SWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSK-MPV--VMYLA 516
S+VV++ LGAL GS+ + E VGR+ +++S + G+L M SK +P+ + ++
Sbjct: 64 SFVVAVLFLGALAGSFSIPFIAEGVGRKNGLYISISVGVLAGGMSIASKFIPLFELYIIS 123
Query: 517 RFLMGASTGVIAVVTMIYVTEIADK 591
R +MG S V ++ I+++E + K
Sbjct: 124 RVVMGWSVSVSLGLSGIFLSEASPK 148
>U41023-1|AAA82340.1| 569|Caenorhabditis elegans Hypothetical
protein F53H8.3 protein.
Length = 569
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Frame = +1
Query: 313 EAGVKITDEQISW--VVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFF 486
+A + +T + W VVS +GA+LG+ +++ E+ GRR +F + + A+
Sbjct: 47 KAPLSLTVSNVIWSFVVSSIAIGAILGASFTRIIGEKYGRRNGMFFNGILNVFAALFELV 106
Query: 487 SK---MPVVMYLARFLMGASTGVIAVVTMIYVTEI 582
+K P ++ RF+ G + G+ + + +Y+ EI
Sbjct: 107 AKRFSSPELLIFGRFVYGINMGLSSGLVPMYLMEI 141
>U12965-9|AAA20605.3| 522|Caenorhabditis elegans Hypothetical
protein F23F12.3 protein.
Length = 522
Score = 40.7 bits (91), Expect = 8e-04
Identities = 24/90 (26%), Positives = 42/90 (46%)
Frame = +1
Query: 319 GVKITDEQISWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMP 498
G K D +W+ ++ +GAL+G+ L + GR+ FV + GI+ + F+
Sbjct: 90 GTKAYDS--AWIATIQFIGALVGALVYGHLGDHFGRKPVSFVGISIGIIFGVASGFAPSW 147
Query: 499 VVMYLARFLMGASTGVIAVVTMIYVTEIAD 588
V + F+ G S I +V Y+ E +
Sbjct: 148 EVFAVLLFICGTSVACIMIVFYAYILEFIE 177
>U12965-7|AAY86205.1| 528|Caenorhabditis elegans Hypothetical
protein F23F12.13 protein.
Length = 528
Score = 40.7 bits (91), Expect = 8e-04
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = +1
Query: 346 SWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFL 525
+WV ++ +G L+G+ L + GR+ F + GIL + F+ V RF+
Sbjct: 97 AWVATIQFIGVLIGAITYGHLGDHFGRKPVSFFGISVGILFGVASGFAPSWEVFAAFRFI 156
Query: 526 MGASTGVIAVVTMIYVTEIAD 588
+G S I +V Y+ E +
Sbjct: 157 VGTSIASILIVFYAYILEFIE 177
>Z99270-1|CAB16470.4| 500|Caenorhabditis elegans Hypothetical
protein Y37A1A.3 protein.
Length = 500
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Frame = +1
Query: 334 DEQISWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGA---IMIFFSKMPVV 504
+ + S++V++ LG+ G++ + + ER GR+K + VS + + I+ F+ ++
Sbjct: 75 ENEWSFIVAIFFLGSATGAFLIKTVAERFGRKKGVIVSLFAQVTSSMLTIVSFWIVNHIL 134
Query: 505 MYLARFLMGASTGVIAVVTMIYVTE 579
ARFLMG + + ++VTE
Sbjct: 135 FIFARFLMGVGITISMGIAAMFVTE 159
>AL021497-2|CAA16400.1| 606|Caenorhabditis elegans Hypothetical
protein Y51A2D.4 protein.
Length = 606
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/78 (28%), Positives = 43/78 (55%)
Frame = +1
Query: 352 VVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMG 531
+VS+ A +GS ++ +GRRK I +SA +GA++ S +++ + R L+G
Sbjct: 70 LVSISPGMAAVGSLMSGTSSDYIGRRKVILGASAIFTIGALVCAASVNKIMLLVGRVLLG 129
Query: 532 ASTGVIAVVTMIYVTEIA 585
+ G +++ +Y+ E A
Sbjct: 130 IAIGFASMIVPVYLGETA 147
>U28735-4|AAF99953.1| 488|Caenorhabditis elegans Hypothetical
protein F48E3.2 protein.
Length = 488
Score = 39.1 bits (87), Expect = 0.002
Identities = 27/124 (21%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Frame = +1
Query: 211 KVQYLAGICASLTFMFTGATLAWPSPAIPKL-----SSGEAGVKITDEQISW----VVSL 363
K+ L+ + A G T A+P+ AI S +++ + W ++++
Sbjct: 7 KLLILSAVLAITAIFQMGYTNAYPNTAIGSFRIFLNESANEPYTLSNSEFEWAWSAMLAI 66
Query: 364 HGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFS---KMPVVMYLARFLMGA 534
+ +G GS + +R+GR+ T+F+ + +L +++ F+ KMP++ +R +M
Sbjct: 67 YFIGFAAGSVISAGVADRIGRKWTLFLGTCGSLLSSLIALFAIILKMPLMFGFSRLVMSL 126
Query: 535 STGV 546
S +
Sbjct: 127 SAAI 130
>Z46381-4|CAA86519.2| 604|Caenorhabditis elegans Hypothetical
protein M01F1.5 protein.
Length = 604
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/76 (27%), Positives = 42/76 (55%)
Frame = +1
Query: 352 VVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMG 531
+VS+ A +GS ++ +GR+K I +S +GAI+ + +++ + R L+G
Sbjct: 73 IVSITPGVAAIGSLCSGPGSDFLGRKKIIIGASVTFTIGAIICAAAWTKIILLIGRILLG 132
Query: 532 ASTGVIAVVTMIYVTE 579
+ G +++ IYV+E
Sbjct: 133 LAIGFASMIVPIYVSE 148
>U28737-2|AAA68272.1| 455|Caenorhabditis elegans Patterned
expression site protein23 protein.
Length = 455
Score = 36.3 bits (80), Expect = 0.016
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +1
Query: 331 TDEQISW---VVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPV 501
T+ + W V+++ +G +GS +++ GR+K S + ++ F +
Sbjct: 74 TNVSVLWWENVIAIQQVGIFVGSILFGYISDHFGRQKVCQYSLLISSVILLVEGFLSSTI 133
Query: 502 VMYLARFLMGASTGVIAVVTMIYVTEI 582
++ L RF++G TG I VV+ TE+
Sbjct: 134 LIALCRFIIGTQTGAIIVVSWSLTTEL 160
>AL021497-3|CAA16405.1| 613|Caenorhabditis elegans Hypothetical
protein Y51A2D.5 protein.
Length = 613
Score = 35.1 bits (77), Expect = 0.038
Identities = 19/76 (25%), Positives = 39/76 (51%)
Frame = +1
Query: 352 VVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMG 531
+VS+ A +G++ ++R GR+ I S+ + GA++ + +VM + R +G
Sbjct: 71 IVSITPGMAAVGAWFSGAGSDRYGRKPIIIGSTLIFVCGAVICAVAWTKIVMLIGRIFLG 130
Query: 532 ASTGVIAVVTMIYVTE 579
G ++V +Y+ E
Sbjct: 131 VGIGFASMVVPVYLGE 146
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +1
Query: 343 ISWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMI 480
I W+ + + L+G + E++GRRK +F+ S G++ ++++
Sbjct: 318 IIWISVILSICNLIGPFAPMFFIEKLGRRK-LFLFSCAGVVVSLVL 362
>Z66567-7|CAC42386.3| 414|Caenorhabditis elegans Hypothetical
protein ZK455.8b protein.
Length = 414
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +1
Query: 364 HGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGASTG 543
+ LG L+G + G +++R GR+ I +L ++ +SK + + RFL+ A+
Sbjct: 26 YSLGYLVGCFVGGFISDRYGRKTAITGFGILTMLFGFLLTYSKEFEIFLVVRFLLAATNE 85
Query: 544 VIAVVTMIYVTEI 582
+ + E+
Sbjct: 86 AADLAAYVLCMEV 98
>Z66567-5|CAA91492.4| 757|Caenorhabditis elegans Hypothetical
protein ZK455.8a protein.
Length = 757
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +1
Query: 364 HGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGASTG 543
+ LG L+G + G +++R GR+ I +L ++ +SK + + RFL+ A+
Sbjct: 314 YSLGYLVGCFVGGFISDRYGRKTAITGFGILTMLFGFLLTYSKEFEIFLVVRFLLAATNE 373
Query: 544 VIAVVTMIYVTEI 582
+ + E+
Sbjct: 374 AADLAAYVLCMEV 386
>AF199013-1|AAG28557.1| 414|Caenorhabditis elegans organic cation
transporter protein.
Length = 414
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +1
Query: 364 HGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGASTG 543
+ LG L+G + G +++R GR+ I +L ++ +SK + + RFL+ A+
Sbjct: 26 YSLGYLVGCFVGGFISDRYGRKTAITGFGILTMLFGFLLTYSKEFEIFLVVRFLLAATNE 85
Query: 544 VIAVVTMIYVTEI 582
+ + E+
Sbjct: 86 AADLAAYVLCMEV 98
>Z66522-7|CAA91409.2| 472|Caenorhabditis elegans Hypothetical
protein F14E5.1 protein.
Length = 472
Score = 32.7 bits (71), Expect = 0.20
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 328 ITDEQISWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAI-MIFFSKMPVV 504
+ E W + GL + G+ G ++ E+VGRRK + + + L I +FF+K+ ++
Sbjct: 302 VESEIAEWSTTAMGLAYVSGTITGGIVIEKVGRRKLLLLFTFLNNLALIAFVFFAKIRIL 361
Query: 505 M 507
+
Sbjct: 362 I 362
>Z66520-13|CAA91392.2| 472|Caenorhabditis elegans Hypothetical
protein F14E5.1 protein.
Length = 472
Score = 32.7 bits (71), Expect = 0.20
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 328 ITDEQISWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAI-MIFFSKMPVV 504
+ E W + GL + G+ G ++ E+VGRRK + + + L I +FF+K+ ++
Sbjct: 302 VESEIAEWSTTAMGLAYVSGTITGGIVIEKVGRRKLLLLFTFLNNLALIAFVFFAKIRIL 361
Query: 505 M 507
+
Sbjct: 362 I 362
>Z99281-14|CAB16524.1| 532|Caenorhabditis elegans Hypothetical
protein Y57G11C.23 protein.
Length = 532
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +1
Query: 370 LGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGASTGVI 549
LG L+G+ L++ +GRR S G+ I+ + Y+ RFL+G +
Sbjct: 115 LGTLVGNLILGYLSDTIGRRPVYIFSILLGVPSVILSAALNDVMSFYIFRFLVGFAIAGT 174
Query: 550 AVVTMIYVTEI 582
V Y +E+
Sbjct: 175 LTVGWTYASEM 185
>Z92807-5|CAB07265.1| 480|Caenorhabditis elegans Hypothetical
protein K11D9.3 protein.
Length = 480
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 373 GALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGASTGVIA 552
G L G++ +++ VGR+ + + GIL + + V+ RF +G S G
Sbjct: 94 GVLCGTFSFGAVSDVVGRKPVAVFALSLGILMNFVTGLAPNYQVLLGIRFFLGLSVGGTL 153
Query: 553 VVTMIYVTEI 582
VV +V E+
Sbjct: 154 VVVCTFVMEM 163
>AL021482-5|CAA16342.1| 480|Caenorhabditis elegans Hypothetical
protein K11D9.3 protein.
Length = 480
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 373 GALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGASTGVIA 552
G L G++ +++ VGR+ + + GIL + + V+ RF +G S G
Sbjct: 94 GVLCGTFSFGAVSDVVGRKPVAVFALSLGILMNFVTGLAPNYQVLLGIRFFLGLSVGGTL 153
Query: 553 VVTMIYVTEI 582
VV +V E+
Sbjct: 154 VVVCTFVMEM 163
>Z79602-1|CAB01888.3| 508|Caenorhabditis elegans Hypothetical
protein K09E9.1 protein.
Length = 508
Score = 29.5 bits (63), Expect = 1.9
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +1
Query: 310 GEAGVKITDEQISWVVSLHGLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFS 489
G A K +++ + + SL GAL+GS+ L++R+GR+ +G I++ FS
Sbjct: 104 GFACQKNSNQTTAMMSSLLMWGALIGSFVCGFLSDRLGRKPVYLGCLLMITIGHILLTFS 163
Query: 490 KMPVVMYLARFL--MGASTGVIAVVTMIYVTE 579
M + L MG G V + +TE
Sbjct: 164 MYLSWMTINATLAAMGFFCGGYMVTNFVILTE 195
>Z68882-3|CAA93106.2| 568|Caenorhabditis elegans Hypothetical
protein C47E12.3 protein.
Length = 568
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 320 PASPLDNFGIAGEGHANVAPVNINVNEAQIPAKYCTFLFVDSAISLIV 177
PA LD G GH + P NINVN+ + Y L +D+ SL+V
Sbjct: 68 PADELDPIHCRGRGHDHDNPDNINVND--VLGDYSLGL-IDTLDSLVV 112
>AC090999-19|AAK26156.1| 575|Caenorhabditis elegans Hypothetical
protein Y82E9BR.16a protein.
Length = 575
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +1
Query: 370 LGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGASTGVI 549
+G + GS +L +R+GR+K F++ I A +I + + LAR G S I
Sbjct: 142 VGQMAGSTTFGMLGDRIGRKKVFFLAIVIQITCAYLIAIAPYWWLYALARAGTGFSHPGI 201
Query: 550 AVVTMIYVTEI 582
V+ ++ E+
Sbjct: 202 FVIAVVIGMEL 212
>Z71262-4|CAA95814.1| 775|Caenorhabditis elegans Hypothetical
protein F22D6.5 protein.
Length = 775
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 278 HANVAPVNINVNEAQIPAKYCTF 210
HA++ P NI VNE+++ K C F
Sbjct: 580 HADIKPDNILVNESKLTLKLCDF 602
>Z69794-1|CAA93679.2| 663|Caenorhabditis elegans Hypothetical
protein R03G8.1 protein.
Length = 663
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 326 FTPASPLDNFGIAGEGHA-NVAPVNINVNEAQIPAKYCTFLFVDSAISL 183
F+ +PL G G+ H N P N N IP +YC F +++ +
Sbjct: 488 FSAITPLQIPGEKGQSHLRNQPPFNRNCQTMPIPFEYCICQFNKTSVPI 536
>Z68296-1|CAA92589.2| 520|Caenorhabditis elegans Hypothetical
protein C46C2.2 protein.
Length = 520
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/71 (23%), Positives = 31/71 (43%)
Frame = +1
Query: 370 LGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFSKMPVVMYLARFLMGASTGVI 549
+G L+G+ + +++GR+KT +S GI + Y+ R L G
Sbjct: 117 VGVLIGNIILGYVADQIGRKKTFILSMLIGIPSLSLSATFNSIAAFYIFRALTGIGIAGT 176
Query: 550 AVVTMIYVTEI 582
+V Y +E+
Sbjct: 177 MIVGWAYFSEL 187
>U46670-3|AAP46279.1| 312|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform d protein.
Length = 312
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 354 GVASWAGCVVRFLRRSIIERTCWTSQNHFCFVCPRNIRC 470
GVAS GC F R + E+T N C V +NIRC
Sbjct: 86 GVASCNGCKTFFRRTIVSEQTFICQYNGNCDV-NKNIRC 123
>U46670-2|AAC48174.4| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform c protein.
Length = 440
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 354 GVASWAGCVVRFLRRSIIERTCWTSQNHFCFVCPRNIRC 470
GVAS GC F R + E+T N C V +NIRC
Sbjct: 86 GVASCNGCKTFFRRTIVSEQTFICQYNGNCDV-NKNIRC 123
>U46670-1|AAP46277.1| 445|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform a protein.
Length = 445
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 354 GVASWAGCVVRFLRRSIIERTCWTSQNHFCFVCPRNIRC 470
GVAS GC F R + E+T N C V +NIRC
Sbjct: 86 GVASCNGCKTFFRRTIVSEQTFICQYNGNCDV-NKNIRC 123
>AY204166-1|AAO39170.1| 436|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 436
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 354 GVASWAGCVVRFLRRSIIERTCWTSQNHFCFVCPRNIRC 470
GVAS GC F R + E+T N C V +NIRC
Sbjct: 77 GVASCNGCKTFFRRTIVSEQTFICQYNGNCDV-NKNIRC 114
>AY204165-1|AAO39169.1| 445|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 445
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 354 GVASWAGCVVRFLRRSIIERTCWTSQNHFCFVCPRNIRC 470
GVAS GC F R + E+T N C V +NIRC
Sbjct: 86 GVASCNGCKTFFRRTIVSEQTFICQYNGNCDV-NKNIRC 123
>AY204164-1|AAO39168.1| 440|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 440
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 354 GVASWAGCVVRFLRRSIIERTCWTSQNHFCFVCPRNIRC 470
GVAS GC F R + E+T N C V +NIRC
Sbjct: 86 GVASCNGCKTFFRRTIVSEQTFICQYNGNCDV-NKNIRC 123
>AY204163-1|AAO39167.1| 440|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 440
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 354 GVASWAGCVVRFLRRSIIERTCWTSQNHFCFVCPRNIRC 470
GVAS GC F R + E+T N C V +NIRC
Sbjct: 86 GVASCNGCKTFFRRTIVSEQTFICQYNGNCDV-NKNIRC 123
>AC024843-10|AAF60845.2| 526|Caenorhabditis elegans Hypothetical
protein Y61A9LA.1 protein.
Length = 526
Score = 27.9 bits (59), Expect = 5.7
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = +1
Query: 196 ESTKRKVQYLA--GICASLTFMFTGA-TLAWPSPAIPKLSSGEAGVKITDEQISWVVSLH 366
+ T R ++Y A G+ + ++FTGA +L S I S T Q +W+
Sbjct: 309 DQTSRLIRYCAWVGVMVKIAYVFTGARSLRGYSTFILYTLS-----HFTYSQATWLSFAT 363
Query: 367 GLGALLGSYGGQLLNERVGRRKTIFVSSAPGILGAIMIFFS 489
GL L + L +R+GRR I VS + +++ +
Sbjct: 364 GLLRLPFTLVPVFLVDRLGRRPLIIVSMLVSFVSILVMIIA 404
>Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical
protein F28D1.10 protein.
Length = 1141
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 271 LAWPSPAIPKLSSGEAGVKITDEQISWVVSLHGLGALLGSYGGQLLNERV 420
+ W LSSG+ + + S L L ++G YG +L+ ER+
Sbjct: 807 MVWSEHLRTMLSSGQEQLSFMPDHYSDPQELRALVQIIGPYGVKLMTERL 856
>Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical
protein F28D1.10 protein.
Length = 1141
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 271 LAWPSPAIPKLSSGEAGVKITDEQISWVVSLHGLGALLGSYGGQLLNERV 420
+ W LSSG+ + + S L L ++G YG +L+ ER+
Sbjct: 807 MVWSEHLRTMLSSGQEQLSFMPDHYSDPQELRALVQIIGPYGVKLMTERL 856
>AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector
protein.
Length = 1141
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 271 LAWPSPAIPKLSSGEAGVKITDEQISWVVSLHGLGALLGSYGGQLLNERV 420
+ W LSSG+ + + S L L ++G YG +L+ ER+
Sbjct: 807 MVWSEHLRTMLSSGQEQLSFMPDHYSDPQELRALVQIIGPYGVKLMTERL 856
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,473,722
Number of Sequences: 27780
Number of extensions: 312320
Number of successful extensions: 814
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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