Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14d05
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    24   1.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   3.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   3.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.0  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   9.0  

>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 516 TFSHGGVDGRNCRGDNDICNRNS 584
           T+SHG  +G+      ++ NRN+
Sbjct: 25  TYSHGWTNGKRSTSLEELANRNA 47


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 128 YANKGVLSPISTIKPS 81
           Y N+ +L+P+ST+ P+
Sbjct: 307 YGNRELLTPVSTMLPA 322


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 128 YANKGVLSPISTIKPS 81
           Y N+ +L+P+ST+ P+
Sbjct: 307 YGNRELLTPVSTMLPA 322


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -2

Query: 510 VHHNRHFTKKYHNRT*YSWGRRNK 439
           +H+N ++   Y+N+  Y+    NK
Sbjct: 90  IHNNNNYKYNYNNKYNYNNNNYNK 113


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 497 LL*CTLHVFSW 529
           +L CT+H+ SW
Sbjct: 170 ILNCTIHIASW 180


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = -2

Query: 570 IYHCHHGNYARR 535
           ++HCHH     R
Sbjct: 22  VHHCHHNGVVHR 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,070
Number of Sequences: 438
Number of extensions: 3874
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)