Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14d04
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    29   0.59 
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    26   4.2  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    25   7.3  
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    25   9.6  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   9.6  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   9.6  

>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +3

Query: 462 RFTSLSDECIRSTLKNFAKFHALSFTLKNKQPETFNSLKSKL 587
           R TS +DE +    KN    +AL+ +LKN+   T+N++K+ +
Sbjct: 456 RKTSKNDEDMSYVRKNSYNTNALANSLKNRVLSTYNTVKANV 497


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 42  EGALKNISHIQLEFIKEVLEKRGYNDRVVHIEAVGAAG 155
           EG   +I H  L +IK+ L + G +D V +I    + G
Sbjct: 122 EGCYLDIDHNDLSYIKQQLSEFGKSDSVEYIIITDSEG 159


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 288 EHHMYTVVLPKYQQLEEEA 344
           E+H Y +  P YQ  EEEA
Sbjct: 369 EYHCYRIGKPLYQNYEEEA 387


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 390 SSTQVPHEVILLEDLLVPGFKMLDRFTSLSDECIRSTLKNFAKFHAL 530
           ++  VPHEV +     V   +    F + S+  IR T+KN   F  L
Sbjct: 96  ANLNVPHEVRVSSLARVQTLETTGSFLNSSNSEIRETIKNEKYFRVL 142


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
 Frame = +3

Query: 222 AKIAPQNENVRMATQTQVLFGNEHHMYTVVLPK-------YQQLEEEAEIPNDDRFRFAE 380
           AK+ P++   R+   + + F N  HM +++L          + L  + E   D+R R  E
Sbjct: 351 AKVRPKDSKDRIVNLSNLYFSNVDHMSSLILGSLKLAHAIMKWLVSDVEHIPDERLR--E 408

Query: 381 CYGSSTQV-PHEVILLEDLLVPGFK 452
           C  S  ++   E  L+ ++    FK
Sbjct: 409 CIESLQEIDSKEENLMTEIFCTAFK 433


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 364 DSDLPNAMAQAL-KSRMK*YY*KIYWCRVLRCWTGS 468
           D+D PN   Q L KS M  YY  I  C +L+ W+ S
Sbjct: 212 DADFPNWYQQVLTKSDMIEYY-DISGCYILKPWSYS 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,927
Number of Sequences: 5004
Number of extensions: 48355
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)