Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14d04
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0733 + 23976835-23976906,23977076-23977279,23977388-239776... 33 0.20
01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245 32 0.35
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116... 31 0.81
06_03_0799 - 24703634-24703766,24703937-24704123,24704468-247046... 30 1.4
06_02_0072 + 11152988-11153102,11153581-11153705,11153860-111540... 30 1.4
09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467... 29 2.5
12_02_0372 + 18212948-18213821,18213887-18214030,18214128-182142... 29 4.3
05_03_0187 + 9413575-9414895,9415014-9415289,9415513-9415631,941... 27 9.9
04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317... 27 9.9
01_01_0209 - 1788630-1788863,1790289-1790435 27 9.9
>06_03_0733 +
23976835-23976906,23977076-23977279,23977388-23977645,
23978002-23978217,23978324-23978479,23978556-23978867,
23978957-23979044,23979224-23979372,23979465-23979755
Length = 581
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +3
Query: 465 FTSLSDECIRSTLKNFAKFHALSFTLKNKQPETFNSLKSKLFDMWSHMDSSAD 623
F S+SD +TL +K K+K+ E +L S+L D+W+ MD+SAD
Sbjct: 222 FKSISD----ATLSKLSKMVIQLKEEKSKRLERIQALASQLTDLWNLMDTSAD 270
>01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245
Length = 686
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = -3
Query: 544 LSVNERAWNFAKFLSVDRMHSSDRDVNLSSILKPGTSRSSSNITSCGT*VLEP 386
+++ + F+K L+ R SSD + SI KP +S S S+++S T V +P
Sbjct: 625 IAITRKKPKFSKILAHFRSSSSDMKEYVLSISKPPSSDSDSSVSSKATTVTDP 677
>09_06_0076 +
20710482-20710670,20711313-20711547,20711664-20711689,
20712000-20712293,20712603-20712728,20712827-20712896,
20712992-20713182,20713394-20713519,20713878-20714279,
20714364-20714758,20714861-20715315,20715403-20715524,
20715653-20715693,20716026-20716129,20716363-20716576,
20717667-20717780,20718576-20718612
Length = 1046
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 21 AMGGLTFEGALKNISHIQLEFIKEVLEKRGYNDRVVHIEAVGAAGD-NFIANVKRI 185
A GL + N+S + E + + +E+ ++DRVV G+ +++AN++RI
Sbjct: 729 ATKGLKLDEKFDNLSIVMKEVLVDTVERDVFSDRVVDSSCCPVTGEYSWVANMERI 784
>06_03_0799 -
24703634-24703766,24703937-24704123,24704468-24704630,
24705533-24705718,24705978-24706105,24706282-24706411
Length = 308
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 381 CYGSSTQVPHEVILLEDLLVPGFKMLDRFTSLSDE 485
C + ++PH + LL+ PG+K D+F +SDE
Sbjct: 239 CSSHARRMPHIIDLLKSWY-PGYKFADKFVEVSDE 272
>06_02_0072 +
11152988-11153102,11153581-11153705,11153860-11154004,
11154219-11154284,11154418-11154540,11154839-11154961,
11156065-11156193,11156510-11156632,11156737-11156838,
11156943-11157065,11157169-11157270,11157370-11157492,
11157791-11157913,11158209-11158331,11158633-11158761,
11160210-11161039
Length = 867
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Frame = +3
Query: 27 GGLTFEGALKNISHIQLEFIKEVLEKRGYNDRVVHIEAVGAAGDNFI----ANVKRITV- 191
GGL + HI E +KEV G N ++ ++ G A +I A +K ++V
Sbjct: 375 GGLFLGNEYEKSVHIDKEDLKEVSVSYGSNVKLSNLFPTGYAHQKYILTSGAGLKEVSVT 434
Query: 192 ---DGENGPFKMIAKI 230
DGE P K +K+
Sbjct: 435 YGSDGEEEPRKTFSKV 450
>09_04_0174 +
15346123-15346207,15346350-15346502,15346623-15346759,
15346856-15347005,15347405-15347506,15347832-15347996,
15348402-15348499,15348704-15348827,15349056-15349145,
15349555-15349599,15350438-15350833
Length = 514
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 324 QQLEEEAEIPNDDRFRFAECYGSSTQVPHEVILLEDLL 437
++LE+E EI N D +RF + +S + ++ ++ DLL
Sbjct: 365 RELEDEIEIQNGDSYRFQQVALTSLTLQAKLSIIHDLL 402
>12_02_0372 +
18212948-18213821,18213887-18214030,18214128-18214273,
18214854-18214862
Length = 390
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 266 LCGHPNVFILRGDFSDHFEGAILAIDCYPFDVGDEVVS 153
L GHPN+ +RG + D I+ C ++ D ++S
Sbjct: 192 LAGHPNIISIRGSYEDAMAVHIVMELCTGGELFDRIIS 229
>05_03_0187 +
9413575-9414895,9415014-9415289,9415513-9415631,
9415749-9416192
Length = 719
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 423 LEDLLVPGFKMLDRFTSLSDECIR--STLKNFAKFHALSFTLKNKQPETFNSLKSKLFDM 596
L+ LL ++++ F L++ R S + + FH L K + + F++ KS+ ++
Sbjct: 430 LKSLLDNKKRVINYFEPLANVLRRMDSDVPSMGFFHGLMLEAKKEISQRFDNDKSRFIEV 489
Query: 597 WSHMDSSAD 623
W+ +D D
Sbjct: 490 WNIIDKRWD 498
>04_04_0939 -
29530242-29531087,29531406-29531597,29531690-29531770,
29532300-29532428,29532579-29532650,29532761-29532829,
29533809-29533891,29534101-29534203,29534289-29534402,
29536230-29536274
Length = 577
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 526 AWNFAKFLSVDRMHSSDRDVNLSSILKPGTSRSSSNITSCGT 401
AW AK S + M ++ R SS+LKP +R+ C +
Sbjct: 335 AWKLAKLDSNEAMKAAARARASSSVLKPVNTRAQYEADRCSS 376
>01_01_0209 - 1788630-1788863,1790289-1790435
Length = 126
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 520 NFAKFLSVDRMHSSDRDVNLSSILK 446
NFA F+++ R+HS+D + L S LK
Sbjct: 40 NFAAFINIARIHSADSLLKLVSELK 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,384,018
Number of Sequences: 37544
Number of extensions: 304521
Number of successful extensions: 737
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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