Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14c23
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0196 + 14995224-14995489,14995859-14995877,14996703-149968... 31 1.2
04_03_0696 + 18797316-18797720 31 1.2
04_04_1378 + 33105564-33105634,33105786-33106253,33106558-331065... 30 1.5
03_02_0130 + 5791925-5792011,5792252-5792288,5792803-5792983,579... 30 1.5
11_06_0675 + 26139284-26139745,26139932-26139980,26140118-261402... 30 2.0
11_04_0459 - 17945840-17945971,17946042-17946351,17947379-179475... 30 2.0
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888 30 2.0
06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998 29 3.5
12_01_0242 + 1812891-1812897,1814073-1814830 29 4.7
06_03_1089 - 27521291-27522124 29 4.7
07_03_1702 + 28828635-28828905,28831222-28831448,28831601-288322... 28 6.2
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 28 6.2
02_05_0035 - 25268882-25268988,25269698-25269812,25270208-252702... 28 6.2
05_01_0582 - 5220614-5220781,5220866-5220930,5221149-5221332 28 8.1
>07_03_0196 +
14995224-14995489,14995859-14995877,14996703-14996839,
14998365-14998457,15001597-15001932,15003035-15003503
Length = 439
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 421 EGKMLTFEMGALLRKRYNDFLGPLYDAESSIVIASDTNLSKMTALLISAGLWPPPEEQLW 600
+GK+L MG++ + ++ P Y + + S T++ +L+ EQ+W
Sbjct: 314 KGKLLIVAMGSI-----DQYIAPEYKIHGELELISSTDVYSFGLVLLEIACTRKDREQIW 368
Query: 601 ND 606
ND
Sbjct: 369 ND 370
>04_03_0696 + 18797316-18797720
Length = 134
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 96 GNLNNNLHKERGRSRGGADQRAGSYTGTG 182
GN+N +L +R R G R GSYTG G
Sbjct: 96 GNVNPSLVADRQRCIGSCPARGGSYTGRG 124
>04_04_1378 +
33105564-33105634,33105786-33106253,33106558-33106583,
33106741-33106771,33106890-33106977,33107094-33107338,
33107339-33107383,33107530-33107621,33107718-33107920,
33108215-33108496
Length = 516
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 565 AGLWPPPEEQLWNDT--IVWQPVPYKYPPQSN 654
AG WPP ++Q W + + W P+ PP +N
Sbjct: 445 AGHWPPQQQQGWGNAGGMSWPHPPHPPPPPTN 476
>03_02_0130 +
5791925-5792011,5792252-5792288,5792803-5792983,
5793156-5793304,5793433-5793666,5794082-5794271,
5794398-5794523,5794603-5794702,5794900-5795289
Length = 497
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 6 YFKCMWISDNVYHYYTS*FCLFFPTDSWNYGN 101
++ W S N Y++ +P DSW YGN
Sbjct: 122 FWASKWNSTNAYNFVKYTISKGYPVDSWEYGN 153
>11_06_0675 +
26139284-26139745,26139932-26139980,26140118-26140215,
26140378-26140588,26140707-26140947,26141051-26141216,
26141308-26141451
Length = 456
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 202 CCCLGVLVGISLIAALVAVILMKDTTVEVTILRQ 303
CCCLG+ ++ +A L + L+K V +RQ
Sbjct: 6 CCCLGLAANVAQLAGLDVITLVKVIKSRVETVRQ 39
>11_04_0459 -
17945840-17945971,17946042-17946351,17947379-17947514,
17948123-17948253,17948337-17948710,17949194-17949246,
17949973-17950288
Length = 483
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 566 LDCGRRRKSSSGMTQ-SCGSRYLTNIRHKAMIFFCTKKNC 682
+ CGR+ +S + T+ SCGSR + R K +F K C
Sbjct: 1 MGCGRKHRSGAPNTRPSCGSRDIIGERCKFFMFCVMKSAC 40
>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
Length = 213
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 574 WPPPEEQLWNDTIVWQPVPYKYPP 645
WPPP+EQ+ +V PVPY PP
Sbjct: 85 WPPPKEQVCK--LVPFPVPYPAPP 106
>06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998
Length = 391
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +3
Query: 159 AGSYTGTGYAHRTHLLLPRRVGGHLAHSRPRSSNTDE 269
AGS G Y H PR GGH SR SS E
Sbjct: 303 AGSAAGESYFSMEHSYEPRGGGGHFVMSRGDSSELHE 339
>12_01_0242 + 1812891-1812897,1814073-1814830
Length = 254
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/66 (28%), Positives = 22/66 (33%)
Frame = +3
Query: 84 SWNYGNLNNNLHKERGRSRGGADQRAGSYTGTGYAHRTHLLLPRRVGGHLAHSRPRSSNT 263
SW N +NN H R R + R R GGH+ R N
Sbjct: 189 SWGNWNNSNNHHSSNNRDSFNGVNRNRYQDPNSISGRK-----RNSGGHIQQRNSRQRNQ 243
Query: 264 DEGYYG 281
EGY G
Sbjct: 244 TEGYQG 249
>06_03_1089 - 27521291-27522124
Length = 277
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 78 TDSWNYGNLNNNLHKERGRSRGGADQRAGSYTGTGYAHRTHLLLPRRV 221
+++ N GN N N + G G D+ A + AH +LP V
Sbjct: 228 SNAGNGGNTNTNTNTNTGGGGGNGDEMAVAMAAVAEAHAAGCMLPLSV 275
>07_03_1702 +
28828635-28828905,28831222-28831448,28831601-28832233,
28832311-28832760
Length = 526
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 373 PPEHVFSPYGAGAMTNEGKMLTFEMGAL 456
PP H + P+GAGA T G+ TF M L
Sbjct: 449 PPLHAYLPFGAGARTCLGQ--TFAMAEL 474
>03_03_0008 -
13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/69 (24%), Positives = 29/69 (42%)
Frame = +1
Query: 319 SHGERTPSERELEMLGTSPPEHVFSPYGAGAMTNEGKMLTFEMGALLRKRYNDFLGPLYD 498
S + +P R + T+ H SP+ + N K+ + RK + FLG L
Sbjct: 789 SQKQLSPLNRIIRSTSTNDNIHSRSPFDSQQQKNLSKLTGHDEANAARKAFGSFLGTLTR 848
Query: 499 AESSIVIAS 525
+ +I A+
Sbjct: 849 TKENIARAT 857
>02_05_0035 -
25268882-25268988,25269698-25269812,25270208-25270276,
25271409-25271511,25271904-25272205
Length = 231
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 249 RSSNTDEGYYGRSHNTSTGTCVDVSWREDSK*TRTRNVRNKSSRAC 386
R TDE Y G+ V+ SW + + +T ++R+ S+ AC
Sbjct: 141 RRRKTDEHYLGKKTRDRKDKMVESSWATNRQ-VQTTDIRSPSTLAC 185
>05_01_0582 - 5220614-5220781,5220866-5220930,5221149-5221332
Length = 138
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 673 FRTEENHCFVADICKVPAATRLCHSRAALPAAA 575
F + +H V+ C +PAA SR+ + AAA
Sbjct: 16 FPSSHHHAAVSSYCALPAAAAFSRSRSRVAAAA 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,308,414
Number of Sequences: 37544
Number of extensions: 410523
Number of successful extensions: 1236
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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