Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14c16
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 31 0.11
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 29 0.80
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 27 2.4
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 27 3.2
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 27 3.2
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 26 4.3
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 26 5.6
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 26 5.6
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 25 9.9
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 31.5 bits (68), Expect = 0.11
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 355 DRSLPLFGFGKRLLLNEVYFCLPLCFLSVLYYAESSLYTRCSKLEGP 215
DR+LP+ G LLLNEV + + Y+ ESS + R + P
Sbjct: 468 DRALPVSGSHPFLLLNEVQVPIRSLIIQPCYFFESSEFDRQGPFDSP 514
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 28.7 bits (61), Expect = 0.80
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 295 CLPLCFLSVLYYAESSLYTRCSKLEGPPKMILILHNYRAVCRLIHC 158
C+P L+ L +L++R S PP ++LIL V L +C
Sbjct: 511 CVPYILLACLILFFMTLFSRSSSTILPPSILLILTFLGIVASLYYC 556
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +1
Query: 379 ETLRHDKKKTPKTLVCHDMANGYHDDSTVDGTGCHHAYTFYNWAAVDIFCYFSHHLITIP 558
ET + TP++L+ D ST DG G A T + + FC F+ H +
Sbjct: 783 ETATILRAATPRSLIIIDELG--RGTSTTDGFGLAWAITEHIVTQIGCFCLFATHYHEMT 840
Query: 559 PLS 567
LS
Sbjct: 841 KLS 843
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 26.6 bits (56), Expect = 3.2
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = -2
Query: 322 RLLLNEVYFCLPLCFLSVLYYAE-SSLYTRCSKLEGPPKMILILHNYRAV---CRLIHCL 155
R L+ + CL + FL +LY E S + CSK +L +++ V +LI L
Sbjct: 16 RPLIPSFHVCLLIMFL-ILYSQEILSFFFMCSKFSMNSLKFCVLFSFKTVYSLLKLIKTL 74
Query: 154 LKLFYYSF 131
++ Y F
Sbjct: 75 IRKLLYCF 82
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 26.6 bits (56), Expect = 3.2
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +1
Query: 202 ISFLEDPPAWS-TLCKEMTPHSKALIKNTEVNKSKPHSTIASFQIQTTEDFCHFNP---D 369
+S ++ P S + KE++PHS+ + N + N S S S T F + P D
Sbjct: 305 LSTIQSPLKTSNSFFKELSPHSQITLSNVKNNHSHVGSQTKSHSFATPSVFDNNKPVSSD 364
Query: 370 TENET 384
N T
Sbjct: 365 NHNNT 369
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +1
Query: 370 TENETLRHDKKKTPKTLVCHDMANGYHDDSTVDGTGCHHAYTFYNWAAVDI 522
T N TL H+ P T +C++ +G+ + + G A + W + I
Sbjct: 315 TPNATLEHELSSIPWTGLCYE--SGFANTFLISGIHSKEAISILKWISDSI 363
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 5.6
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Frame = +1
Query: 148 ISTDSELTCKPLDSYEELISFLEDPPAWSTLCKEMTPHSKAL----IKNTE----VNKSK 303
+ TD L Y +++ +D ++S+ E++ + L + T+ +N +
Sbjct: 267 VITDENYLPVSLPVYSPVLNSFDDSDSYSSTDSELSEEAFLLPAQASRKTQKIHYINDND 326
Query: 304 PHSTIASFQIQTTEDFCHFNPDTENETL 387
P ++ +S+Q DF H N N L
Sbjct: 327 PSNSYSSYQHSHVHDFIHKNNTHSNRVL 354
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -3
Query: 648 PKRNPIVPLRYHCTDNFDAVRVANIDPAQRGYRYEMMT-KITEDIDSCPVVESVGMVTP 475
PK++ + + Y D+ + ++A D + ++ KI+ D++ C V +S+ TP
Sbjct: 346 PKKDKVCNMAYIQFDSIEQAKLA-YDKGHPSWHVTLVKGKISTDMEECKVSKSILKTTP 403
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 340 LFGFGKRLLLNEVYFCLPLCFLSVLYYAES-SLYTRCSKLEG 218
++G K +L ++FC+ YYA+S ++ C L G
Sbjct: 108 IYGHKKMFVLGYIWFCIWSLISGFSYYAKSVIMFDVCRALTG 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,377
Number of Sequences: 5004
Number of extensions: 62135
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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