Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14c16
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0612 - 16177362-16178102,16178404-16178539,16180612-161806... 98 5e-21
03_05_0911 + 28697654-28697698,28698170-28698278,28698352-286984... 32 0.36
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 29 4.4
07_01_0561 + 4171812-4172144,4173468-4174253 28 5.9
06_03_0246 + 18672704-18673111,18674069-18674164,18674362-186745... 28 5.9
04_01_0298 - 3981944-3982348 28 5.9
12_01_1022 - 10435409-10435564,10435950-10436219,10436820-104371... 28 7.7
08_02_0623 - 19429029-19430207 28 7.7
07_01_0390 + 2931331-2932299 28 7.7
>05_03_0612 -
16177362-16178102,16178404-16178539,16180612-16180658,
16181002-16181082,16181765-16181846,16181924-16182036,
16182349-16182456,16182531-16182642,16182738-16182847,
16183105-16183242,16183370-16183834
Length = 710
Score = 98.3 bits (234), Expect = 5e-21
Identities = 38/80 (47%), Positives = 49/80 (61%)
Frame = +1
Query: 412 KTLVCHDMANGYHDDSTVDGTGCHHAYTFYNWAAVDIFCYFSHHLITIPPLSWINVGHAH 591
+ L CHD GY DD+ G AY ++W +D+F YFSH+L+T+PP W+N H H
Sbjct: 93 RILACHDFRGGYRDDAAPQGGHDPGAYALWHWHLIDVFVYFSHYLVTLPPPCWVNAAHLH 152
Query: 592 GVKVIGTVITEWNDGVAFWE 651
GVKV+GT ITEW G E
Sbjct: 153 GVKVLGTFITEWEKGAEICE 172
>03_05_0911 +
28697654-28697698,28698170-28698278,28698352-28698433,
28698486-28698514,28699472-28699567,28699860-28699963,
28700071-28700201,28700276-28700369,28701666-28701721,
28702728-28702821
Length = 279
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 624 LRYHCTDNFDAVRVANIDPAQRGYRYEMMTKITEDIDSCPVVESVGM 484
L HC + + N+DPA + Y + T I E I V+E +GM
Sbjct: 22 LYQHCETVGRTIHMVNLDPAAEHFSYPVSTDIRELISLDDVMEELGM 68
>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
7535889-7535932,7536042-7536146,7536223-7536344,
7536807-7536894,7536966-7537052,7537718-7537786,
7537859-7538188,7539777-7539824,7540003-7540069,
7540150-7540208,7541220-7541453,7541536-7541601,
7541684-7541883,7542104-7542197,7542295-7542414,
7542596-7542703,7542808-7542871,7543378-7543409,
7546049-7548007
Length = 1407
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Frame = +1
Query: 208 FLEDPPAWSTLCKEMTPHS--KALI-KNTEVNKSKPH-STI--ASFQIQTTEDFCHFNPD 369
FLE W LCK HS KA + TE N P ST+ F++ D C +P+
Sbjct: 890 FLELLKEWEKLCKTYVKHSRTKACVDSTTESNNETPDCSTVPPEEFEVWKLVDICFGDPN 949
>07_01_0561 + 4171812-4172144,4173468-4174253
Length = 372
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/62 (24%), Positives = 25/62 (40%)
Frame = +1
Query: 217 DPPAWSTLCKEMTPHSKALIKNTEVNKSKPHSTIASFQIQTTEDFCHFNPDTENETLRHD 396
DP W + + L+KN + K H+ + + HF D E + L+ D
Sbjct: 117 DPDRWEFANENFLRGQRHLLKNIKRRKPPSHTASNQQSLGPYLEVGHFGYDAEIDRLKRD 176
Query: 397 KK 402
K+
Sbjct: 177 KQ 178
>06_03_0246 +
18672704-18673111,18674069-18674164,18674362-18674571,
18675780-18675851,18675898-18675945
Length = 277
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 456 QYRRRHGVSPCLHFLQLGSCRY 521
++ +R G CLH+L+ G C+Y
Sbjct: 97 EHPQRPGEHDCLHYLRFGRCKY 118
>04_01_0298 - 3981944-3982348
Length = 134
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Frame = +1
Query: 127 VKMNSKTISTDSELTCKP--LDSYEE-----LISFLEDPPAWSTLCKEMTPHSKALIKNT 285
++++SKT TD+E +P D E+ I+F+ P ST CK P K +
Sbjct: 44 IQVDSKTEGTDTEPEIEPDITDPSEDETPVHRITFVGGPRTLSTACKSTRPSGKKPKLDP 103
Query: 286 EVNKSKP 306
E S+P
Sbjct: 104 ETPTSEP 110
>12_01_1022 -
10435409-10435564,10435950-10436219,10436820-10437125,
10437932-10438057,10439825-10439893,10440443-10440487,
10440717-10440776,10441527-10441589,10442186-10442266,
10442494-10442916
Length = 532
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 438 KRVPR*QYRRRHGVSPCLHFLQLGSCRY 521
++VP +Y R G C HF++ G C++
Sbjct: 426 QQVPSEEYPERPGQPECQHFVKSGFCKF 453
>08_02_0623 - 19429029-19430207
Length = 392
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 220 PPAWSTLCKEMTPHSKALIKNTEVNKSKPHSTIASFQIQTTEDFCHF 360
PP+ ST +PH+ +TE+ K T+A F +Q HF
Sbjct: 8 PPSSST--SSSSPHNTTSTHSTELVKGTHRFTVAGFSLQKRNGAGHF 52
>07_01_0390 + 2931331-2932299
Length = 322
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Frame = +1
Query: 127 VKMNSKTISTDSELTCKP--LDSYEE-----LISFLEDPPAWSTLCKEMTPHSKALIKNT 285
++++S+T TD+E +P D E+ I+FL PP ST K P K +
Sbjct: 232 IQVDSETEGTDTEPEIEPDITDPLEDETPVPRITFLGGPPTLSTARKSTRPPGKRPKPDP 291
Query: 286 EVNKSKP 306
E S+P
Sbjct: 292 EATTSEP 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,874,566
Number of Sequences: 37544
Number of extensions: 378470
Number of successful extensions: 893
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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