Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14c16
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              24   1.5  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   2.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.1  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   8.0  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 508 PSCRKCRHGDTPCRLRYCHRGTRLP 434
           P C  C  GD    ++YC +GT+ P
Sbjct: 76  PICGAC--GDIAHTVKYCPKGTKNP 98


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 274 IKN--TEVNKSKPHSTIASFQIQTTED 348
           IKN  T++NK K H T+    I+ +E+
Sbjct: 168 IKNVLTKINKIKEHDTVLVVNIEKSEN 194


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 418 LVCHDMANGYH 450
           LVC D A+GYH
Sbjct: 188 LVCGDRASGYH 198


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 139 SKTISTDSELTCKPLDSYEELISFLEDPP 225
           SK   + S L  KP++  +EL +   +PP
Sbjct: 10  SKVDRSTSPLPRKPVNPVQELKALFAEPP 38


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 232 STLCKEMTPHSKALIKNTEVNKSK 303
           ST  K  T  +  ++KNTE+ K K
Sbjct: 473 STRPKSNTVENACVLKNTEIFKDK 496


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 360 EMTEVFRCLDLERGYC 313
           E  E +RC+  ER YC
Sbjct: 31  ERQEEYRCVICERVYC 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,330
Number of Sequences: 438
Number of extensions: 4386
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)