Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14c15
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.4  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.6  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 422 PFLPLPVPRLRTQFPMQIFPHHALWCSVKVYPGKC 318
           PF   P+  LR + P+ I P H +  +  V P  C
Sbjct: 66  PFAKPPIGPLRFRKPLPIEPWHGV-LNATVLPNSC 99


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 422 PFLPLPVPRLRTQFPMQIFPHHALWCSVKVYPGKC 318
           PF   P+  LR + P+ I P H +  +  V P  C
Sbjct: 66  PFAKPPIGPLRFRKPLPIEPWHGV-LNATVLPNSC 99


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -2

Query: 384 IPHADIPTPRLVVLCEGIPGEVPPYGLAFPRPWFP 280
           IP    P PRL    E  PG   P  +  PRP  P
Sbjct: 106 IPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP 140



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -2

Query: 384 IPHADIPTPRLVVLCEGIPGEVPPYGLAFPRPWFP 280
           IP    P PRL    E  PG   P  +  PRP  P
Sbjct: 132 IPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP 166


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = -3

Query: 428 RNPFLPLPVPRLRTQFPMQIFPHHALWCSVKVYPGKCLRTV 306
           + PF P   P +     +  FP   +W +  +Y  K +R +
Sbjct: 288 QKPFYPGYYPTMTYSNGLP-FPQRPIWSNFPIYKYKYIREI 327


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = -3

Query: 428 RNPFLPLPVPRLRTQFPMQIFPHHALWCSVKVYPGKCLRTV 306
           + PF P   P +     +  FP   +W +  +Y  K +R +
Sbjct: 288 QKPFYPGYYPTMTYSNGLP-FPQRPIWSNFPIYKYKYIREI 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,905
Number of Sequences: 438
Number of extensions: 4882
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)