Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14c05
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 29 0.73
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch... 28 0.96
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 27 1.7
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 2.9
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 27 2.9
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 27 2.9
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 3.9
SPBC3B9.22c |dad4||DASH complex subunit Dad4|Schizosaccharomyces... 26 3.9
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 9.0
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 25 9.0
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 9.0
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 28.7 bits (61), Expect = 0.73
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 534 KPNWLTGIFHRSGHGSNC 587
+P+W+ G+ GHGSNC
Sbjct: 132 RPHWVDGVNVACGHGSNC 149
>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 28.3 bits (60), Expect = 0.96
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 455 PNFTLFHIDNNRDSTLPLRSIESSALSRAFVS 360
P F LFH D NR +T L S++S R +S
Sbjct: 21 PCFFLFHNDENRTTTSNLDSVKSKKKRRKTIS 52
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 271 SIPSHELNDLNNGLRQSSSSSKVNKAPHTPLTNARDNAEDSIDL 402
S H+L +L + + S S + N A H PL+ D++ +
Sbjct: 155 SSTQHQLTELKDVMHSMSDSHEQNNALHPPLSRTTSFVADNVSV 198
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.6 bits (56), Expect = 2.9
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +1
Query: 271 SIPSHELNDLNNGLRQSSSSSKVNKAP-HTPLTNARDNAEDSIDLKGKV---ESRLLS 432
+IP LN+LNN + + + + V++ P LT+ + + +DL+ V SRL+S
Sbjct: 406 TIPDDGLNELNNNVVEKAEPAPVSEIPLSKTLTSHKIVPKHQVDLENYVFTEGSRLMS 463
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 90 WFIWPKFLIILYLPFTH 40
W IW K L+I+ L FTH
Sbjct: 47 WTIWLKSLVIMVLLFTH 63
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.6 bits (56), Expect = 2.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -2
Query: 500 TGDSLEKFVFNFTVHPNFTLFH 435
T D + ++ N HPN+ FH
Sbjct: 422 TRDEISNYLLNIQAHPNYQTFH 443
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +1
Query: 415 ESRLLSMWNNVKFGWT---VKLK-TNFSKESPVWLL 510
E R ++++ + F W +K TN+ KES VWLL
Sbjct: 173 EVRYANIFSKLSFSWISSFIKFGYTNYLKESDVWLL 208
>SPBC3B9.22c |dad4||DASH complex subunit Dad4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 72
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 313 LGHYLNRLVHDSEY*NRLNHSLQLTMRTMVH*KMLLSTWFHY 188
LG ++ + +E RLNHSLQL + ++ ++ W +Y
Sbjct: 13 LGRIISNVEKLNESITRLNHSLQLINMSNMNVELASQMWANY 54
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -1
Query: 117 QVSIGKFTLWFIWPKFLIILYLPFTHTLHSIEVEVVG 7
+V GKF +++ K+ L+ PF L ++ ++ G
Sbjct: 87 EVHFGKFASYYLQGKYFFDLHPPFAKLLLALVAKLAG 123
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 508 LGRCYHRKLSPTGSLESSTEVGMEAT 585
+G+C LSP E S E +EAT
Sbjct: 163 IGKCNMNNLSPDHYCEKSAESSLEAT 188
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.0 bits (52), Expect = 9.0
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +1
Query: 376 DNAEDSIDLKGKVESRLLSMWNNVKFGWTVKLKTNFSKESPVWLLGRC 519
DN ++ L GK ES + +G T KL T S E +WL G+C
Sbjct: 1226 DNINVTLVLSGK-ESE-----SKKNYGVTEKLATPPSHEPRLWLNGKC 1267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,697
Number of Sequences: 5004
Number of extensions: 59725
Number of successful extensions: 154
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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