Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14c05
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0229 + 15506772-15508304                                         28   5.3  
12_01_0971 - 9781887-9781924,9782036-9782247,9782327-9784114,978...    28   7.0  
08_02_0146 - 13195691-13196658,13197613-13197809,13198002-131984...    28   7.0  
04_04_1216 + 31811403-31812267,31813187-31813877,31813981-318141...    28   7.0  
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950...    27   9.2  

>07_03_0229 + 15506772-15508304
          Length = 510

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 373 ERLSVGYEVLCLPSKRTNFALGHYLNRLVHDSEY*NRLNHSLQLT 239
           E +S+ +E +   +K T+ AL   + RLVH S+   +L H +  T
Sbjct: 294 EMVSLCWEFMNAAAKTTSTALEWTMARLVHHSDIQRKLRHDIAKT 338


>12_01_0971 -
           9781887-9781924,9782036-9782247,9782327-9784114,
           9784630-9785432
          Length = 946

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 62  IIKNLGHMNQRVNLPIETCELHRLDCLLL 148
           II+  GH+N+ +N+P   C L +L+ L++
Sbjct: 621 IIRGGGHVNE-INIPSSVCRLQKLERLIV 648


>08_02_0146 -
           13195691-13196658,13197613-13197809,13198002-13198479,
           13199660-13199782,13200139-13200466
          Length = 697

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -2

Query: 455 PNFTLFHIDNNRDSTLPLRSIESSALSRAF 366
           PN  ++H+ N R+ T+PL++IE S +  A+
Sbjct: 566 PN-VVYHLYNCRELTIPLQTIEESRVGGAY 594


>04_04_1216 +
           31811403-31812267,31813187-31813877,31813981-31814131,
           31814289-31814351,31814590-31814664,31814934-31815032
          Length = 647

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 241 SIAMNGSSGFSIPSH-ELNDLNNGLRQSSSSSKVNKAPHTPLTNARDNAEDS 393
           S   + SS FS  S+ + + +N+G+  S S+SK  K   TP  +A  + E+S
Sbjct: 296 SCITSSSSRFSHASNSKFSLMNHGVLMSQSTSKSKKFAQTPNYSASKSMEES 347


>05_03_0356 +
           12894195-12894237,12894347-12894484,12894868-12895018,
           12895399-12895526,12895704-12895840,12896742-12896847,
           12898659-12898762,12899159-12899281,12899620-12899700,
           12900159-12900304,12902171-12902243,12902970-12903060,
           12904978-12905018,12906079-12906153,12906402-12906569,
           12907638-12907676,12907759-12907847,12908014-12908078,
           12908794-12908840,12908924-12908983,12909168-12909239,
           12910143-12910172,12910526-12910617,12910719-12910802,
           12911941-12912046,12912171-12912233,12912776-12912870,
           12913000-12913180
          Length = 875

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 129 RCSSQVSIGKFTLWFIWPKFLIILYLPFTHTLHSIEV 19
           R +SQ  I +  LWF   K  I+LY   +H  H  ++
Sbjct: 728 RTTSQQDISRARLWFFEGKKKILLYSERSHFYHRYKI 764


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,772,354
Number of Sequences: 37544
Number of extensions: 338641
Number of successful extensions: 891
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)