Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14c04
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 30 0.27
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 30 0.27
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 30 0.27
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 28 1.4
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 28 1.4
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.9
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 1.9
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.5
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 27 2.5
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 27 3.3
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.3
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 26 5.8
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 5.8
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 25 7.7
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.7
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 25 7.7
SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.7
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.7
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 30.3 bits (65), Expect = 0.27
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 184 LQEPKNEISTSQIEKPIGVPE-NGTSTTQQKHENETVLREDKEKSCLT 324
+ EP ST E P +P+ NG+ TT+ N L+E++ K ++
Sbjct: 514 IHEPYRPASTQPTENPPAMPDHNGSPTTEPPKPNAFELKEERLKEIIS 561
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 30.3 bits (65), Expect = 0.27
Identities = 20/94 (21%), Positives = 37/94 (39%)
Frame = +1
Query: 79 HVFIAITFMKYSKCYVIEDSGKVDAQKQLLRKLEILQEPKNEISTSQIEKPIGVPENGTS 258
H I + F K C ++ + + + I + P + VPE G
Sbjct: 122 HSKIMVNFFKDDSCQIVIHTANLVEPDWIGMSQAIFKTPLLYPKANDSLSTSSVPEYGNP 181
Query: 259 TTQQKHENETVLREDKEKSCLTLFFDQVAKIFKH 360
+ +KHE +++D ++C + D + FKH
Sbjct: 182 SKIRKHEGSLDIKDD--RNCDIIDVDSAFENFKH 213
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.3 bits (65), Expect = 0.27
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 187 QEPKNEISTSQIEKPIGVPENGTSTTQQKHENETVLREDKEKSCLTLFFDQVAKIFKHLF 366
QE S ++ P+NG S K+EN+T+L+ ++ T ++ + K FK++F
Sbjct: 611 QELAISFENSNVKTQSVEPDNGLSLEALKNENQTLLKNLEDS---TARYEHLQKSFKNVF 667
Query: 367 YG-DVEKPSN 393
++PSN
Sbjct: 668 NQLRKQQPSN 677
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 27.9 bits (59), Expect = 1.4
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +1
Query: 133 DSGKVDAQKQLLRKLEILQEPKNEISTSQIEKPIGVPENGTSTTQQKHENETVLREDKEK 312
D+ + QK+ L +EI + E+S + K + V + K E L E+K K
Sbjct: 8 DAPTILGQKRELEDVEIQDDDIQEVSKEDLLKDVRVRSIQFDELESKIEGLQNLAEEKLK 67
Query: 313 SCLTL--FFDQVAKIFKHLFYGDVEKPSNS 396
TL ++ ++ + F +F G+ K S
Sbjct: 68 VLATLVSWWPEILQQFSVVFQGNELKDFES 97
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 151 AQKQLLRKLEILQEPKNEISTSQIEKPIGVPENGTSTTQQKHENETVLRED 303
AQ+ ++ L+ N STS+ PI ENG+S+ Q + V D
Sbjct: 588 AQRSIVLIENTLKGKTNSQSTSEFVSPISDTENGSSSQQVSEAKDIVEPSD 638
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 169 RKLEILQEPKNEISTSQIEKPIGVPENGT-STTQQKHENETVLREDKEK 312
+KLE K++ S ++P+ VP+ GT Q+ H+ + V KEK
Sbjct: 71 QKLETSDALKSKSKDSSKKEPVVVPKKGTPKIFQENHKVKKVKSPKKEK 119
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/74 (21%), Positives = 36/74 (48%)
Frame = +1
Query: 136 SGKVDAQKQLLRKLEILQEPKNEISTSQIEKPIGVPENGTSTTQQKHENETVLREDKEKS 315
S + + +++++ K E +E +E S+ E+G S + E+E+ ++K++
Sbjct: 181 SSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRK 240
Query: 316 CLTLFFDQVAKIFK 357
++ AKI K
Sbjct: 241 AEPASEERPAKITK 254
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 190 EPKNEISTSQIEKPIGVPENGTSTTQQKHENETVLRED 303
+PKN STS +PI E +S + H NE++ D
Sbjct: 79 KPKNYDSTSNSNEPISFNEPDSSNSH--HNNESICNND 114
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 234 NWFFYLRCRYFIFWFL*NFQFS 169
NW+F+++ RY F+F F FS
Sbjct: 59 NWWFFIKMRYLSFFFEFFFLFS 80
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +1
Query: 298 EDKEKSCL----TLFFDQVAKIFKHLFYGDVEKPSNSRIELL 411
ED+E SCL LF+D K+ K L + +V + ELL
Sbjct: 178 EDEEYSCLDINTALFYDCARKLAKSLRFANVSRDPRLSSELL 219
>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 306 GEELSNSVLRSGCQNIQTLILRGR 377
GEELSNS R C IQ L+ + R
Sbjct: 146 GEELSNSQYRLECAAIQKLVAQKR 169
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 25.8 bits (54), Expect = 5.8
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = +1
Query: 148 DAQKQLLRKLEILQEPKNEISTSQIEKP 231
+AQK + + + EP+ E+ T+++++P
Sbjct: 123 EAQKLIAQNVPQFTEPEGEVETAEVQEP 150
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 199 NEISTSQIEKPIGVPENGTSTTQQKHENETVL 294
N ++ + + +G+ E T KHENE +L
Sbjct: 711 NPLTAVYVAEQVGIVEKPTLVLDIKHENEKIL 742
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 140 EKWTHKSSY*ENWKFYKNQKMKYLHRK*KNQLECQKTEQA 259
E+W K + W+ NQ+ K + + K+ E QK EQA
Sbjct: 1126 EEWKEKMREYKKWQSTANQRAKQMEKFEKSATEKQK-EQA 1164
>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 208 STSQIEKPIGVPENGTSTTQQKHENETVLREDKE 309
ST + ++ VPE + N T LRE+KE
Sbjct: 102 STDKSQQSFSVPETSIQPQSSQTPNITSLREEKE 135
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 403 ELLESDFAVTNDSGTSREISNHHDIFPNRF 492
+LL A TN SGTS +SN + F
Sbjct: 583 DLLRKTLAYTNSSGTSTVLSNDSSAISSTF 612
>SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 232
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 487 RFDLTDPNAEVEIFEPRYHGRLKEETKE 570
R+D + + EI RYHGR K E E
Sbjct: 135 RYDQVETMEKYEISMDRYHGRYKLELYE 162
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 7.7
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 169 RKLEILQEPKN--EISTSQIEKPIGVPENGTSTTQQKHENETVLREDKEKSCLTLFFDQV 342
RKL + Q+ K+ E ++ I+K GT T+Q +E E + R E +DQ
Sbjct: 57 RKLLVKQKRKSNKEFQSNIIKKRKDEERKGTLKTEQANEEELLQRSRLELERKAKKYDQY 116
Query: 343 A 345
A
Sbjct: 117 A 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,728
Number of Sequences: 5004
Number of extensions: 60760
Number of successful extensions: 234
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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