Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14c04
(681 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z97653-1|CAJ55832.1| 479|Homo sapiens F-box and leucine-rich re... 31 3.8
BC036680-1|AAH36680.1| 479|Homo sapiens F-box and leucine-rich ... 31 3.8
AK075017-1|BAC11355.1| 259|Homo sapiens protein ( Homo sapiens ... 31 3.8
AE006464-13|AAK61245.1| 581|Homo sapiens possible G-protein rec... 31 3.8
AL833836-1|CAD38696.1| 996|Homo sapiens hypothetical protein pr... 31 5.0
AL357336-3|CAI40457.1| 996|Homo sapiens novel protein protein. 31 5.0
AL139341-1|CAI17220.1| 996|Homo sapiens novel protein protein. 31 5.0
BC113430-1|AAI13431.1| 259|Homo sapiens ubiquitin-conjugating e... 30 8.8
BC104890-1|AAI04891.1| 259|Homo sapiens ubiquitin-conjugating e... 30 8.8
BC094777-1|AAH94777.1| 259|Homo sapiens ubiquitin-conjugating e... 30 8.8
AL162741-16|CAI23259.1| 292|Homo sapiens ubiquitin-conjugating ... 30 8.8
AL162741-15|CAI23257.1| 259|Homo sapiens ubiquitin-conjugating ... 30 8.8
AL162741-14|CAI23258.1| 196|Homo sapiens ubiquitin-conjugating ... 30 8.8
AK056065-1|BAB71086.1| 224|Homo sapiens protein ( Homo sapiens ... 30 8.8
AF296658-1|AAK52609.1| 258|Homo sapiens ubiquitin conjugating e... 30 8.8
>Z97653-1|CAJ55832.1| 479|Homo sapiens F-box and leucine-rich
repeat protein 16 protein.
Length = 479
Score = 31.1 bits (67), Expect = 3.8
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +1
Query: 10 HLQHCVAVVIQKKITKKEIMNIIHVFIAITFMKYSKCYVIEDSGKVDAQKQLLRKLEIL 186
H H + ++ +IT ++N++H +T + S C + D G V+ + LRKL L
Sbjct: 294 HSTHTLRLLSCWEITNHGVVNVVHSLPNLTALSLSGCSKVTDDG-VELVAENLRKLRSL 351
>BC036680-1|AAH36680.1| 479|Homo sapiens F-box and leucine-rich
repeat protein 16 protein.
Length = 479
Score = 31.1 bits (67), Expect = 3.8
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +1
Query: 10 HLQHCVAVVIQKKITKKEIMNIIHVFIAITFMKYSKCYVIEDSGKVDAQKQLLRKLEIL 186
H H + ++ +IT ++N++H +T + S C + D G V+ + LRKL L
Sbjct: 294 HSTHTLRLLSCWEITNHGVVNVVHSLPNLTALSLSGCSKVTDDG-VELVAENLRKLRSL 351
>AK075017-1|BAC11355.1| 259|Homo sapiens protein ( Homo sapiens
cDNA FLJ90536 fis, clone OVARC1000105, highly similar to
Ubiquitin conjugating enzyme E2. ).
Length = 259
Score = 31.1 bits (67), Expect = 3.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 538 YHGRLKEETKEALKCPEGYIMTPNGCTVRNSKMIISVPNQCP 663
YHG+L + K P Y++TPNG N+++ +S+ + P
Sbjct: 61 YHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDSHP 102
>AE006464-13|AAK61245.1| 581|Homo sapiens possible G-protein
receptor protein.
Length = 581
Score = 31.1 bits (67), Expect = 3.8
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +1
Query: 10 HLQHCVAVVIQKKITKKEIMNIIHVFIAITFMKYSKCYVIEDSGKVDAQKQLLRKLEIL 186
H H + ++ +IT ++N++H +T + S C + D G V+ + LRKL L
Sbjct: 326 HSTHTLRLLSCWEITNHGVVNVVHSLPNLTALSLSGCSKVTDDG-VELVAENLRKLRSL 383
>AL833836-1|CAD38696.1| 996|Homo sapiens hypothetical protein
protein.
Length = 996
Score = 30.7 bits (66), Expect = 5.0
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 166 LRKLE-ILQEPKNEISTSQIEKPIGVPENGTSTTQQKHENETVLREDKEKS 315
L++LE +LQ+ K E ++ K I ++G +Q+HE + E+++K+
Sbjct: 278 LKELERVLQQKKIEAECLKLRKEIVEAQSGVKLIKQRHEEDDEEEEEEDKT 328
>AL357336-3|CAI40457.1| 996|Homo sapiens novel protein protein.
Length = 996
Score = 30.7 bits (66), Expect = 5.0
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 166 LRKLE-ILQEPKNEISTSQIEKPIGVPENGTSTTQQKHENETVLREDKEKS 315
L++LE +LQ+ K E ++ K I ++G +Q+HE + E+++K+
Sbjct: 278 LKELERVLQQKKIEAECLKLRKEIVEAQSGVKLIKQRHEEDDEEEEEEDKT 328
>AL139341-1|CAI17220.1| 996|Homo sapiens novel protein protein.
Length = 996
Score = 30.7 bits (66), Expect = 5.0
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 166 LRKLE-ILQEPKNEISTSQIEKPIGVPENGTSTTQQKHENETVLREDKEKS 315
L++LE +LQ+ K E ++ K I ++G +Q+HE + E+++K+
Sbjct: 278 LKELERVLQQKKIEAECLKLRKEIVEAQSGVKLIKQRHEEDDEEEEEEDKT 328
>BC113430-1|AAI13431.1| 259|Homo sapiens ubiquitin-conjugating
enzyme E2, J2 (UBC6 homolog, yeast) protein.
Length = 259
Score = 29.9 bits (64), Expect = 8.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 538 YHGRLKEETKEALKCPEGYIMTPNGCTVRNSKMIISVPNQCP 663
YHG+L + K P Y++TPNG N+++ +S+ + P
Sbjct: 61 YHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHP 102
>BC104890-1|AAI04891.1| 259|Homo sapiens ubiquitin-conjugating
enzyme E2, J2 (UBC6 homolog, yeast) protein.
Length = 259
Score = 29.9 bits (64), Expect = 8.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 538 YHGRLKEETKEALKCPEGYIMTPNGCTVRNSKMIISVPNQCP 663
YHG+L + K P Y++TPNG N+++ +S+ + P
Sbjct: 61 YHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHP 102
>BC094777-1|AAH94777.1| 259|Homo sapiens ubiquitin-conjugating
enzyme E2, J2 (UBC6 homolog, yeast) protein.
Length = 259
Score = 29.9 bits (64), Expect = 8.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 538 YHGRLKEETKEALKCPEGYIMTPNGCTVRNSKMIISVPNQCP 663
YHG+L + K P Y++TPNG N+++ +S+ + P
Sbjct: 61 YHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHP 102
>AL162741-16|CAI23259.1| 292|Homo sapiens ubiquitin-conjugating
enzyme E2, J2 (UBC6 homolog, yeast) protein.
Length = 292
Score = 29.9 bits (64), Expect = 8.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 538 YHGRLKEETKEALKCPEGYIMTPNGCTVRNSKMIISVPNQCP 663
YHG+L + K P Y++TPNG N+++ +S+ + P
Sbjct: 94 YHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHP 135
>AL162741-15|CAI23257.1| 259|Homo sapiens ubiquitin-conjugating
enzyme E2, J2 (UBC6 homolog, yeast) protein.
Length = 259
Score = 29.9 bits (64), Expect = 8.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 538 YHGRLKEETKEALKCPEGYIMTPNGCTVRNSKMIISVPNQCP 663
YHG+L + K P Y++TPNG N+++ +S+ + P
Sbjct: 61 YHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHP 102
>AL162741-14|CAI23258.1| 196|Homo sapiens ubiquitin-conjugating
enzyme E2, J2 (UBC6 homolog, yeast) protein.
Length = 196
Score = 29.9 bits (64), Expect = 8.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 538 YHGRLKEETKEALKCPEGYIMTPNGCTVRNSKMIISVPNQCP 663
YHG+L + K P Y++TPNG N+++ +S+ + P
Sbjct: 61 YHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHP 102
>AK056065-1|BAB71086.1| 224|Homo sapiens protein ( Homo sapiens
cDNA FLJ31503 fis, clone NT2NE2005720, highly similar to
Mus musculus Ubc6p homolog mRNA. ).
Length = 224
Score = 29.9 bits (64), Expect = 8.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 538 YHGRLKEETKEALKCPEGYIMTPNGCTVRNSKMIISVPNQCP 663
YHG+L + K P Y++TPNG N+++ +S+ + P
Sbjct: 26 YHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHP 67
>AF296658-1|AAK52609.1| 258|Homo sapiens ubiquitin conjugating
enzyme 6 protein.
Length = 258
Score = 29.9 bits (64), Expect = 8.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 538 YHGRLKEETKEALKCPEGYIMTPNGCTVRNSKMIISVPNQCP 663
YHG+L + K P Y++TPNG N+++ +S+ + P
Sbjct: 61 YHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHP 102
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.317 0.134 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,332,915
Number of Sequences: 237096
Number of extensions: 1853699
Number of successful extensions: 8462
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8456
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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