Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14c04
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.2  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 176 WKFYKNQKMKYLHRK*KNQ--LECQKTEQAQRSKNMKMKRSLEK 301
           W F++ +K  Y H+  K Q  L  + ++  +  KN+ MK  L+K
Sbjct: 180 WTFHEGRKQFYFHQFYKQQPDLNYRNSDVREEMKNI-MKFWLDK 222


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/50 (22%), Positives = 22/50 (44%)
 Frame = +1

Query: 160 QLLRKLEILQEPKNEISTSQIEKPIGVPENGTSTTQQKHENETVLREDKE 309
           Q+L +  +++ PK +    + E+ + V  NG          E V   D++
Sbjct: 343 QVLPRFLLIERPKKDEDEEEEEEVVVVGRNGAGVGAMNANGEAVGEVDED 392


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 230 GFSICDVDISFFGSCKISNFLNSC 159
           G   CD  I+F   C  ++ LN C
Sbjct: 94  GPRFCDTWIAFDVMCSTASILNLC 117


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 343 AKIFKHLFYGDVEKPSNSRIELLESD 420
           A++FK LF+  +    N+ I+ +ES+
Sbjct: 352 ARMFKDLFFLQILDLRNNSIDRIESN 377


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,351
Number of Sequences: 438
Number of extensions: 4150
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)