Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14c02
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0771 - 5982826-5983327,5983424-5984772                           29   3.5  
08_01_0578 + 5139324-5140190                                           28   6.1  
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874...    27   8.1  

>01_01_0771 - 5982826-5983327,5983424-5984772
          Length = 616

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -2

Query: 567 LSEPSPVTGTHSTIGEVFADRCIAAYSITAMLITMLTLN--IKFRRFATMIAMIRHFYRG 394
           L  P   T  H+T+    A  CI  +S   +L ++L+++    F   AT + + R++ RG
Sbjct: 396 LVHPRTGTPVHATVLIAAAGACIGLFSSLDVLSSLLSVSTLFIFMMMATALLVRRYYVRG 455

Query: 393 KQQR 382
              R
Sbjct: 456 VTSR 459


>08_01_0578 + 5139324-5140190
          Length = 288

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 251 IVSRRQHGAHLRTPADD 301
           +VSR QHGAH R P D+
Sbjct: 208 LVSRAQHGAHHRAPYDN 224


>03_02_0473 +
           8745721-8745994,8746083-8746090,8746232-8746324,
           8746665-8746893,8747314-8747420,8747560-8747622,
           8747883-8747983,8748996-8749090,8749330-8749350,
           8749987-8750082,8750188-8750308,8750415-8750570,
           8750679-8750869,8751207-8751478,8751853-8751954,
           8752006-8752038,8752132-8752308,8752397-8752466,
           8752512-8752585,8752667-8752908,8752983-8753129,
           8753526-8753751,8753893-8753970,8754378-8754521,
           8754829-8755008,8755335-8755394,8755484-8755523,
           8758653-8759137
          Length = 1294

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 7   IARLYTGRLCLTLSRLRVQNFLPVCKFQNISVKFCL 114
           +AR+Y  +LC ++SR RV +  P  K Q  S+ + L
Sbjct: 343 LARVYLAKLCHSISRARVLDERPDIKSQYSSLLYQL 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,598,425
Number of Sequences: 37544
Number of extensions: 345113
Number of successful extensions: 869
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)