Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14b24
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    27   1.8  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   2.4  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   5.5  
SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6 |Schizosac...    25   5.5  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   5.5  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   7.3  

>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/73 (19%), Positives = 35/73 (47%)
 Frame = +3

Query: 225 YPRFPDYKDPEITPSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAK 404
           + R   Y+ P++       +  ++S K      + + ++LK+  E  +++ K + E+  +
Sbjct: 630 HSRVDRYEHPKVLEDNDSTISSLESLKRE---NEELREQLKVEHEENISMQKQLSELKGE 686

Query: 405 LWKIKHLIKITPI 443
           L  ++   K +PI
Sbjct: 687 LNTLRSARKASPI 699


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 333 LDELKIHEETRVTVVKNIPEINAKLWKI 416
           + E+  H+ +R+ +V+NI  I    WK+
Sbjct: 278 IPEISFHDTSRLDLVRNIASIPKSRWKL 305


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +3

Query: 144 FNPLVSIIRSKGYKHPGGIRYPGGITYYPRFPDYKDPEITPSKLFRVERIKSSKHFPYWQ 323
           F P++ +I++   + PGGI  P      P  P   DP    S+   +++ K +       
Sbjct: 741 FQPILELIKASPTELPGGI--PRKRRVLPELPLAPDPPPFTSQKITLKQTKQA------D 792

Query: 324 KRILDELKI 350
            R+L++LKI
Sbjct: 793 MRLLNKLKI 801


>SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +3

Query: 339 ELKIHEETRVTVVKNIPEINAKLWKIKHLIKITPIEFP---YGEPTADDINYTILKENGQ 509
           +++ H  + V  V+ + +++ ++ K   L       FP   Y EP  + +  T+ K    
Sbjct: 55  QIECHTVSMVRAVEQLLDVSRQI-KSYWLTNSLSTSFPTVDYSEPDLEKVKRTLTKLQNH 113

Query: 510 CLVTKKLEPE 539
            L    +EPE
Sbjct: 114 LLEVSLIEPE 123


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 402 KLWKIKHLIKITPIEFPYGEPT 467
           K+W +++L  + PI FP G PT
Sbjct: 239 KVWDLRNLSSLVPIPFPAG-PT 259


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 390  EINAKLWKIKHLIKITPIEFPYGEPTADDINYTILKENGQC 512
            E +++L ++  LIK+ P++  Y + ++D+ N  +    G C
Sbjct: 1837 EDDSELERLSKLIKVPPLQELYSQMSSDENNQILELIAGWC 1877


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,708
Number of Sequences: 5004
Number of extensions: 51551
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)