Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14b24
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0279 - 15249361-15249612,15251270-15251506,15252704-152527...    35   0.049
08_01_0081 - 574119-575204,575794-576191,576321-576382,576581-57...    29   1.8  
02_05_0258 + 27222058-27223198,27223297-27223460,27224399-272245...    28   5.6  
01_05_0777 + 25110356-25110662,25112569-25112789,25112880-251131...    27   7.4  
08_01_0649 + 5607234-5608397,5609358-5609513,5609598-5609796,561...    27   9.8  
01_05_0327 + 20984336-20985478                                         27   9.8  

>08_02_0279 -
           15249361-15249612,15251270-15251506,15252704-15252772,
           15252845-15252895,15254009-15254056,15254187-15254267,
           15256219-15256257,15256486-15256551,15258113-15258236,
           15258576-15258696,15258771-15258900,15259692-15259853
          Length = 459

 Score = 34.7 bits (76), Expect = 0.049
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +3

Query: 204 YPGGITYYPRFPDYKDPEITPSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKN 383
           Y   + ++PRFPD K   + P +L R   +K   H   W  + + E++  EE  +   + 
Sbjct: 334 YVRSVAFHPRFPDNKLSAVPPLRLKRERELKRRPHQNGWLFKRVPEMRDPEEPVMLFTRP 393

Query: 384 IPEINAKLWKIK 419
           I     K+  I+
Sbjct: 394 IDPDKLKMAGIR 405


>08_01_0081 -
           574119-575204,575794-576191,576321-576382,576581-576653,
           576754-576824,576961-577148,577230-577377,577465-577503,
           577601-577656,577745-577798,577900-578003,578117-578217,
           578726-578796,578912-578968,579306-579422,579653-579682
          Length = 884

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = +3

Query: 198 IRYPGGITYYPRFPDYK--DPEITPSKLFR---VERIKSSKHFPYWQKRILDELKIHEET 362
           +++P G TY+ R+  +   D +    +L     +E +K       WQ+ IL +  + E  
Sbjct: 312 VKFPAGRTYHRRYTKFHGTDRDAAAERLAHDALLEHMKWESQIEEWQRPILQDKSLPEWY 371

Query: 363 RVTVVKNIPEINA 401
            +T+   +  +NA
Sbjct: 372 PITLFNELYYLNA 384


>02_05_0258 +
           27222058-27223198,27223297-27223460,27224399-27224575,
           27224713-27224761,27224991-27225793
          Length = 777

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 318 WQKRILDELKIHEETRVTVVKN 383
           W+K++ DE+K  E+ R+ + KN
Sbjct: 426 WEKKLYDEVKAEEKMRLLLAKN 447


>01_05_0777 +
           25110356-25110662,25112569-25112789,25112880-25113127,
           25113274-25113664,25113751-25114155,25115260-25115366,
           25115833-25116170,25116206-25116486,25116645-25116889,
           25116998-25117382,25117459-25117884
          Length = 1117

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +3

Query: 129 KLLRNFNPLVSIIRSKGYK--HPGGIRYPGGI 218
           ++LR + PL ++ R K YK    GG+RYP G+
Sbjct: 396 EVLRLYTPLTALQR-KTYKPMELGGVRYPAGV 426


>08_01_0649 + 5607234-5608397,5609358-5609513,5609598-5609796,
            5612419-5613608,5614505-5614660,5614742-5615041
          Length = 1054

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 91   FVTNNLSPIK*TENYYEILIHWFLSFDQK-VINIQEVFV 204
            F  NNL  +K T    ++++H    F Q+  I++Q++FV
Sbjct: 971  FACNNLKKVKITCRKDDVMVHMLAKFLQRNGISLQKIFV 1009


>01_05_0327 + 20984336-20985478
          Length = 380

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 135 LRNFNPLVSIIRSKGYKHPGGIRYPGGITYYPRFPDYKD 251
           L +  P+ S+ RS  Y+H    +   G+TYY + P++++
Sbjct: 287 LPSSEPVYSLSRSYPYEHK--FQTTRGVTYYVKLPNFEE 323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,404,589
Number of Sequences: 37544
Number of extensions: 280811
Number of successful extensions: 568
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)