Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14b24
         (545 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000217-1|AAH00217.1|  161|Homo sapiens mitochondrial ribosomal...    85   2e-16
AK126402-1|BAC86542.1|  191|Homo sapiens protein ( Homo sapiens ...    85   2e-16
BC022391-1|AAH22391.1|  161|Homo sapiens mitochondrial ribosomal...    83   6e-16
AC092587-4|AAX88929.1|  161|Homo sapiens unknown protein.              83   6e-16
AB051342-1|BAB54932.1|   68|Homo sapiens mitochondrial ribosomal...    56   8e-08

>BC000217-1|AAH00217.1|  161|Homo sapiens mitochondrial ribosomal
           protein L30 protein.
          Length = 161

 Score = 85.0 bits (201), Expect = 2e-16
 Identities = 42/96 (43%), Positives = 61/96 (63%)
 Frame = +3

Query: 249 DPEITPSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLI 428
           DP+  P KL  V RIKS++  PYW+K I+  L + +     V KNIP +NAKL  +KHLI
Sbjct: 59  DPQ-NPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLI 117

Query: 429 KITPIEFPYGEPTADDINYTILKENGQCLVTKKLEP 536
           +I P++ P G PT ++++ T LK  G+ +V   L+P
Sbjct: 118 RIKPLKLPQGLPTEENMSNTCLKSTGELVVQWHLKP 153


>AK126402-1|BAC86542.1|  191|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44438 fis, clone UTERU2019940, moderately
           similar to Homo sapiens mitochondrial ribosomal protein
           L30 (MRPL30). ).
          Length = 191

 Score = 85.0 bits (201), Expect = 2e-16
 Identities = 42/96 (43%), Positives = 61/96 (63%)
 Frame = +3

Query: 249 DPEITPSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLI 428
           DP+  P KL  V RIKS++  PYW+K I+  L + +     V KNIP +NAKL  +KHLI
Sbjct: 89  DPQ-NPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLI 147

Query: 429 KITPIEFPYGEPTADDINYTILKENGQCLVTKKLEP 536
           +I P++ P G PT ++++ T LK  G+ +V   L+P
Sbjct: 148 RIKPLKLPQGLPTEENMSNTCLKSTGELVVQWHLKP 183


>BC022391-1|AAH22391.1|  161|Homo sapiens mitochondrial ribosomal
           protein L30 protein.
          Length = 161

 Score = 83.0 bits (196), Expect = 6e-16
 Identities = 41/96 (42%), Positives = 60/96 (62%)
 Frame = +3

Query: 249 DPEITPSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLI 428
           DP+  P KL  V RIKS++  PYW+K I+  L + +     V KNIP +NAKL  +KHLI
Sbjct: 59  DPQ-NPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLI 117

Query: 429 KITPIEFPYGEPTADDINYTILKENGQCLVTKKLEP 536
           +I P++ P G P  ++++ T LK  G+ +V   L+P
Sbjct: 118 RIKPLKLPQGLPAEENMSNTCLKSTGELVVQWHLKP 153


>AC092587-4|AAX88929.1|  161|Homo sapiens unknown protein.
          Length = 161

 Score = 83.0 bits (196), Expect = 6e-16
 Identities = 41/96 (42%), Positives = 60/96 (62%)
 Frame = +3

Query: 249 DPEITPSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLI 428
           DP+  P KL  V RIKS++  PYW+K I+  L + +     V KNIP +NAKL  +KHLI
Sbjct: 59  DPQ-NPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLI 117

Query: 429 KITPIEFPYGEPTADDINYTILKENGQCLVTKKLEP 536
           +I P++ P G P  ++++ T LK  G+ +V   L+P
Sbjct: 118 RIKPLKLPQGLPAEENMSNTCLKSTGELVVQWHLKP 153


>AB051342-1|BAB54932.1|   68|Homo sapiens mitochondrial ribosomal
           protein L30 protein.
          Length = 68

 Score = 56.0 bits (129), Expect = 8e-08
 Identities = 25/55 (45%), Positives = 37/55 (67%)
 Frame = +3

Query: 372 VVKNIPEINAKLWKIKHLIKITPIEFPYGEPTADDINYTILKENGQCLVTKKLEP 536
           V KNIP +NAKL  +KHLI+I P++ P G P  ++++ T LK  G+ +V   L+P
Sbjct: 6   VHKNIPSVNAKLKVVKHLIRIKPLKLPQGLPAEENMSNTCLKSTGELVVQWHLKP 60


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,855,063
Number of Sequences: 237096
Number of extensions: 1715489
Number of successful extensions: 6999
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6988
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)