Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14b14
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...   107   2e-24
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    28   1.2  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.5  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    27   3.5  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    27   3.5  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    26   4.7  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.1  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    26   6.1  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   6.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   8.1  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    25   8.1  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   8.1  

>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score =  107 bits (256), Expect = 2e-24
 Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 17/217 (7%)
 Frame = +3

Query: 111 KVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLD 290
           +V NF AGPA +   V E    +  NF+  G+ + E SHRS     +    +   R L +
Sbjct: 6   EVVNFAAGPAAMITSVVEEFGKDFVNFQGLGMGVAEISHRSKQGSGIVTSAESNFRKLYN 65

Query: 291 VPDNYKVXXXXXXXXXXXXXVPLNLI---------SRTGTADYVVTGAWSXXXXXXXXXY 443
           +P+N+ +                N+          +++  A+Y++TGAWS          
Sbjct: 66  IPENFHILFMQGGGTEQFAACLYNVYAHHALKNGNAKSLVANYIITGAWSKKAYAEAERL 125

Query: 444 G-KVNLVLPPTD---KYEDIPD--QTKWNLDPNASYVHICTNETIHGVEFDFIPDT--KG 599
           G   ++ +   +   KY  +P+    K+  D   S V+ C NET+HGVEF+  P    KG
Sbjct: 126 GFPCHVAVDMKELAGKYGSLPEDKDLKFTPDGETSLVYYCDNETVHGVEFNEPPTNIPKG 185

Query: 600 VPLIADMSSNIMSKKVDVSKFGVIYAGAQKNIGTSGV 710
              + D+SSN +S+K+D +K  +I+AGAQKN G +G+
Sbjct: 186 AIRVCDVSSNFISRKIDFTKHDIIFAGAQKNAGPAGI 222


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 522 WDQGSILSDQVCLHIYLSVVAPNLLSHIFSPPW 424
           WD+  +L+++  L I L  +AP     +FSPPW
Sbjct: 275 WDRAELLANK--LGISLPKMAPLDFGDLFSPPW 305


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 171  KNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLL 287
            +N+ +      +SLL  S  S++Y  L +   D+V N+L
Sbjct: 1197 RNQWSQVRALALSLLSDSLNSTSYRLLGISCSDMVSNIL 1235


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 171 KNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDVPDNY 305
           +++ T ++ SG+  L T HR     KLN +   ++  +LD+ + +
Sbjct: 211 ESQSTMYKKSGLKTLVTLHRDLGIDKLNQDEVTIITAVLDLREKH 255


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 150 EEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVV 275
           E V  +  N + +   + ++LL T H S T  KLNV   D++
Sbjct: 604 ESVDSVTCNYVLSSSKNPMNLLFTLHNSITDGKLNVHCNDII 645


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 646 TFXDIMFEDISAIKGTPFVS 587
           TF DI+FED+  +  +PF S
Sbjct: 540 TFWDILFEDVPGVFQSPFQS 559


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 691 FF*APAYITPNFETSTFXDIMFEDISAIKGTPFVSGMKSNS 569
           FF   A   PN   S F  IM +++  +KG   +  M ++S
Sbjct: 287 FFLQIAVAIPNGGLSNFSSIMLKNLGYVKGKALLMNMPTSS 327


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 366 LSLKEQLQIDQDPHQLKTALCSCPVHLISFAQ 271
           L+LK+ + I  + H L  A+CS     ISF Q
Sbjct: 352 LTLKDNICIIDEAHNLIDAICSMHSSSISFRQ 383


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -2

Query: 694 IFF*APAYITPNFETSTFXDIMFEDISAIKGTPFVS--GMKSNSTPCIVSLVQICTYEAL 521
           IFF     IT +   +     +++D   +K +      G+ S+   CI+S   + T E  
Sbjct: 136 IFFLGNFKITNSMSAAMLTFKVYDDSKRLKASSMADYIGVLSSKLACIISKPAVKTPEIY 195

Query: 520 GSRFHFV 500
              FH++
Sbjct: 196 SKLFHYL 202


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 168  IKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDVPDNYKV 311
            +  EL   E S   LLE + R S +      ++  +++L DVP   K+
Sbjct: 2671 VLTELAKHEGSSELLLECAWRISDWSNNRESLEVAIKSLSDVPTPRKL 2718


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
 Frame = -3

Query: 381 YQFWILSLKEQLQIDQDPHQLKTALCSCPVHLISFAQHP------EFRHLASCMLKNDDL 220
           YQFWI  L   +   ++   +   L   P  L SF   P       F +L  C+ KN  +
Sbjct: 168 YQFWIERLLHGITEKEELQHIYKILTLTPASLDSFQNRPPYIGITTFPNLQHCIKKNQPI 227


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 626 KHYVXES*CFKVWGDICWCSKEYWY 700
           +H V     F+++  + WC  +YWY
Sbjct: 195 EHAVAPFFVFQIFCCVLWCLDDYWY 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,567
Number of Sequences: 5004
Number of extensions: 60152
Number of successful extensions: 198
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)