Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14b13
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.47 
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    27   3.3  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   4.4  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    26   5.8  
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    26   5.8  
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    25   7.7  

>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 310 DGLLCWNPTPSHTVAVQKCFKEFFGIKYDETQNASR-LCLDGVWQNYTDYSNCTERI 477
           D    WN   S++  V +C K FF  +Y +     R   L   + N+ D   CTE +
Sbjct: 186 DNKTTWNFQASYSPMVSECLKLFFRYQYSQFLFVYRESFLSDYYYNFHDGFYCTEHL 242


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -1

Query: 311 SKYAGQ*YSVRLAFLAKHSVLAVAFSITLSALSKVCKSSSLPLKMYYQLRIAAKSALVCS 132
           S YAG  Y  RLA +  HS      S   SALS+V K   +P+ + Y        +++ S
Sbjct: 122 SLYAGLTYPKRLAGIMGHSGFLPLASKFPSALSRVAK--EIPILLTYMTEDPIVPSVLSS 179

Query: 131 LAS--LINTQSL 102
            ++  LIN   L
Sbjct: 180 ASAKYLINNLQL 191


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 319 LCWNPTPSHTVAVQKCFKEFFGIKYDETQNASRLCL 426
           LC++  P+   A+ KC K F  +K  E+ N   L L
Sbjct: 294 LCYSEKPNGINAIMKCMKNFANLKV-ESMNVFDLWL 328


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -1

Query: 419 RREAFCVSSYFIPKNSLKHFWTA---TVWLGVGF 327
           R    C++S FIP   L   WT+    +W+G  F
Sbjct: 410 RLVGMCIASPFIPTGLLIFAWTSFPRLIWIGPAF 443


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 109 NHYSIGTRTGSSIPIPFTETGSGISRVTLDRAGV 8
           N Y +   TGSSI I   ET   +  +T+D  GV
Sbjct: 244 NRYWLCAATGSSIRIFDLETQEKVDELTVDFVGV 277


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 586 LRCLRNTIHTNLMTTYIL-SACSWILNLAL 672
           L C  +   T  + T IL + CSWI+NLAL
Sbjct: 238 LDCYGDPTVTGKIGTDILDNKCSWIINLAL 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,420
Number of Sequences: 5004
Number of extensions: 55491
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)