Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14b13
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0458 + 3536162-3537794,3537905-3538272                           29   3.4  
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548...    29   3.4  
04_01_0490 - 6440176-6440448,6440785-6441074,6441156-6441304,644...    29   3.4  
08_02_0740 + 20593389-20593521,20593654-20593783,20593888-20594554     29   4.5  
09_06_0191 + 21446357-21446776                                         28   7.9  

>11_01_0458 + 3536162-3537794,3537905-3538272
          Length = 666

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 313 GLLCWNPTPSHTVAVQKCFKEFFGI 387
           GL C NPTPS  +++Q+   +  GI
Sbjct: 634 GLCCTNPTPSERISMQEAAAKLHGI 658


>06_03_1508 - 30653967-30654245,30654342-30654631,30654773-30654841,
            30654854-30654921,30655016-30655492,30655578-30655874,
            30655974-30656824,30656917-30656990,30657270-30657292,
            30657709-30657772,30658098-30658370,30658511-30658587,
            30658686-30658912
          Length = 1022

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = -1

Query: 425  RHRREAFCVSSYFIPKNSLKHFWT---ATVWLGVGFQHNNPSKYAGQ*YSVRLAFLAKHS 255
            R R       +YF+ K+++ HF T     V+L + +  NNP     + Y V +A +   +
Sbjct: 854  RERASGMSSLAYFMSKDTIDHFNTIIKPIVYLSMFYFFNNPRSSIWENYVVLVALVYCVT 913

Query: 254  VLAVAFSITLSALSKVCKSSSLPL 183
             +   F+I     S    S+ LP+
Sbjct: 914  GIGYTFAIFFQPGSAQLWSALLPV 937


>04_01_0490 - 6440176-6440448,6440785-6441074,6441156-6441304,
            6441432-6441890,6441973-6442269,6442604-6443502,
            6443793-6443827,6443984-6444078,6444184-6444247,
            6446099-6446175,6446330-6446514
          Length = 940

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -1

Query: 425  RHRREAFCVSSYFIPKNSLKHFWTAT---VWLGVGFQHNNPSKYAGQ*YSVRLAFLAKHS 255
            R R       +YF+ ++++ HF T     V+L + +  NNP       Y + LA +   +
Sbjct: 774  RERESGMSSLAYFLARDTIDHFSTIVKPIVYLSMFYYFNNPRSTITDNYIILLALVYCVT 833

Query: 254  VLAVAFSITLSALSKVCKSSSL 189
             +   F+I  +  S    S SL
Sbjct: 834  GIGYTFAICFNPGSAQLVSWSL 855


>08_02_0740 + 20593389-20593521,20593654-20593783,20593888-20594554
          Length = 309

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 422 VWTVFGRTTPTTRIARSGSLMCHPRTWPVSYT*RDTLSVSPFYRWPSSSSCILRI 586
           V T  G +TPTT  + S S +    T   S    D  ++ P   WP  + C++ +
Sbjct: 194 VCTAAGASTPTTSSSSSSSSVASSTT---SCDEVDAAALLPVLEWPDDAMCLMEL 245


>09_06_0191 + 21446357-21446776
          Length = 139

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 260 AWRGTLISQNTTARHILMDCCVGTRRRATRSPSRNALKNFL 382
           AW G +I   T+   ++ D C   R R TR  +R  L+NFL
Sbjct: 96  AW-GLVILVETSVLAVI-DACERRRARLTRDVARKVLENFL 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,526,720
Number of Sequences: 37544
Number of extensions: 344990
Number of successful extensions: 816
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)