Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14b13
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.2  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +1

Query: 211 LESAESVIENATARTECLARNANLTEYYCPAYFDGLLCWNPTPSHTVAVQK--CFKE 375
           L   E+ ++   A  E   +   +    C +YF  LL  NP    T+ + +  CF +
Sbjct: 29  LLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFND 85



 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 103 YSIGTRTGSSIPIPFTETGSGISRVTLDRA 14
           Y I  R G  +  PF  + +  S   LDRA
Sbjct: 499 YKIARREGIRLAAPFNASPTTWSPADLDRA 528


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 229 VIENATARTECLARNANLTEYYCPAYFDGLLCWNPTPSHTVAVQKCFKEF 378
           ++ N T   + LA  A   E Y P+  +  L WN  P ++  V+  ++ F
Sbjct: 2   LLHNKTLAGKALAFIAE--EGYVPSMREKFLGWNVPPEYSDLVRPHWRAF 49


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 290 TTARHILMDCC 322
           T  RH++M CC
Sbjct: 2   TKGRHVVMSCC 12


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 229 VIENATARTECLARNANLTEYYCPAYFDGLLCWNPTPSHTVAVQKCFKEF 378
           ++ N T   + LA  A   E Y P+  +  L WN  P ++  V   ++ F
Sbjct: 2   LLHNKTLAGKALAFIAE--EGYVPSMREKFLGWNVPPEYSDLVHPHWRAF 49


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 646 KPIVYMWSLNLYVSCFLSIL 587
           K I+YM  L L +SC ++ L
Sbjct: 149 KTILYMVKLTLKLSCAMNFL 168


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 629 VVIKFVCIVFLKH 591
           ++  FVC VFLKH
Sbjct: 669 LITLFVCGVFLKH 681


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,698
Number of Sequences: 438
Number of extensions: 3819
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)