Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14b08
         (199 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   0.60 
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   1.4  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    23   5.6  
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    23   5.6  

>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 26.2 bits (55), Expect = 0.60
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 67  NRNSN*FSYSDLFKYQYKTNK 129
           N+  N  S+SDL K+ YKT+K
Sbjct: 278 NKLDNSASFSDLLKFVYKTSK 298


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 52  FVYRTNRNSN*FSYSDLFKYQYKTNK 129
           +  RTN  SN FS +DLF + + T K
Sbjct: 138 YTMRTNFFSNGFSSNDLFPHSFPTWK 163


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 76  NYDLYDRQNTQ*SIKQHIINNKNSL 2
           ++D++DR+      KQ +IN K SL
Sbjct: 373 SFDVWDREYYTARYKQSLINQKPSL 397


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 47  SVVHKTTHNKQQKLI 3
           S VH TTH+K  KL+
Sbjct: 464 SAVHLTTHDKLAKLV 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 471,946
Number of Sequences: 5004
Number of extensions: 5359
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)