Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14b05
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    32   0.068
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    32   0.089
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    31   0.21 
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    31   0.21 
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    29   0.48 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   0.48 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    29   0.63 
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    28   1.5  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    27   2.5  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    27   2.5  
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    27   3.4  
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...    26   4.4  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    26   4.4  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   4.4  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    26   5.9  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    26   5.9  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    26   5.9  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    26   5.9  

>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 32.3 bits (70), Expect = 0.068
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +3

Query: 174 KNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKK 332
           K +TV+GGG++G  +  V ++ G  VT+V+            I   LSR+  K
Sbjct: 218 KKMTVLGGGIIGLEMGSVWSRLGAEVTVVEFLPAVGGPMDADISKALSRIISK 270


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 31.9 bits (69), Expect = 0.089
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +3

Query: 177 NVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKS 299
           +V +IGGG  G+G+A  ++  G NV L++ ++ A   + KS
Sbjct: 69  DVLIIGGGATGTGVAVDASTRGLNVCLLEKTDFASETSSKS 109


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 23/71 (32%), Positives = 31/71 (43%)
 Frame = +3

Query: 141 FSSSSAMQSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSR 320
           F S         NV V+G G + +   Q +  AG NVT+   S++ L  AKK   T+   
Sbjct: 156 FGSKEHQVKPGNNVLVLGTGGVSTFALQFALAAGANVTVTSSSDEKLEFAKKLGATHTIN 215

Query: 321 VAKKMYKDNPQ 353
                YK  PQ
Sbjct: 216 -----YKKTPQ 221


>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 174 KNVTVIGGGL-MGSGIAQVSAQAGQNVTLVDVSNDALAKAKK 296
           KN  V G    +G  IA   AQAG NV +  ++ D   KAKK
Sbjct: 22  KNCVVFGAAKGIGFSIATAFAQAGGNVIITYLTTDPTEKAKK 63


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 174 KNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAK 287
           KNV VIGGG  G   A  +++ G   TL+  S D + +
Sbjct: 17  KNVVVIGGGHAGVEAAAAASRLGAKTTLLTKSFDNIGQ 54


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 23/103 (22%), Positives = 49/103 (47%)
 Frame = +3

Query: 252 TLVDVSNDALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSA 431
           TL D +ND   K  K   +N S + K+   D+ ++  + + + L +   + +A   SK  
Sbjct: 655 TLSDENNDLRTKLLKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRK---SEEALRFSKLE 711

Query: 432 DLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEI 560
              +  +++N++ KH+  +       S    A NT+++  +E+
Sbjct: 712 AKNLREVIDNLKGKHETLEAQRNDLHSSLSDAKNTNAILSSEL 754


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +3

Query: 129 IVRNFSSSSAM--QSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSI 302
           I+RNF  SSA+  QS++ NV V GG    + ++   A       L +V  D   K  K  
Sbjct: 581 IIRNFQFSSALKRQSSVSNVRVSGGSFK-TFVSVKGAPEVIATMLREVPKD-YEKIYKDY 638

Query: 303 GTNLSRVAKKMYK 341
           G   SRV    YK
Sbjct: 639 GRKGSRVLALGYK 651


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
 Frame = +3

Query: 186 VIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALA--KAKKSIGTNLSRVAKKMYKDNPQEG 359
           VIGGGL G          G NV L+D  N A      K + G N +    +  +      
Sbjct: 43  VIGGGLAGLSATNTILDLGGNVLLLD-KNTAFGGNSVKAASGINAAPTQLQFDQHVSDSV 101

Query: 360 EKFVNDSL 383
             F NDS+
Sbjct: 102 NTFYNDSI 109


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
            Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
 Frame = +3

Query: 249  VTLVDVSNDALAKA--KKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEAS 422
            +T   V  + LA+A  K  I   + +  K   K  P+E E F+   L   N   +  E  
Sbjct: 861  ITEKSVEENILARAQYKLDIDGKVIQAGKFDNKSTPEEREAFLRSLLENENGEEENDEKG 920

Query: 423  KSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASNTSS---LSINEIASVVKRKD 584
            +  D  +  I+   + + +LFKQ+       + +  N      + ++E+    +R++
Sbjct: 921  ELDDDELNEILARGDDELRLFKQMTEDLERESPYGKNKEKERLIQVSELPEFYQREE 977


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 143 FKFLCNAKCYQECNGYWRWSNGL 211
           F F+CNA  Y   N Y  W+  L
Sbjct: 619 FYFVCNATSYSSLNPYGNWARPL 641


>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 555 EIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKT 680
           E++ V     +F GLHF     V R L    G   +   Y+T
Sbjct: 250 EVSKVCFNHPEFAGLHFTGSTAVFRSLWGTIGENVANGKYRT 291


>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +3

Query: 267 SNDALAK---AKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSADL 437
           S DA+ K   A K+   NL +V+     D P+    F ND +  +  +T  A  +K AD 
Sbjct: 254 STDAVPKKLDASKASSLNLEKVS--YLTDEPKFRFDFNNDEMAVVKLSTGIAAFAKDADT 311

Query: 438 VVEAIVENIE 467
           +   +   +E
Sbjct: 312 LRTILKAKLE 321


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 131 RKKFFKFLCNAKCY 172
           RK+FF FL N +CY
Sbjct: 629 RKRFFDFLVNTQCY 642


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
 Frame = +3

Query: 258 VDVSNDALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASK--SA 431
           V  SND L K+ + +  NLS V  K+ +      E+        ++  T+ A+  +    
Sbjct: 515 VKKSNDDLQKSSRDVAANLSDVKAKVSEIRKAYDEELAKAKQISLDIETNKAQTEQVNRE 574

Query: 432 DLVVEAIVENIEVKHKLFKQLDGVAPSHTIFASN---TSSLSINEIASVVKRKDK 587
             ++EA +  ++ ++K   ++     + +  A N   +S+ SI ++ S V  K++
Sbjct: 575 YSILEATLNALQKQNKQKGEVLEQVVAESEAAKNMVESSNASIQQLKSEVADKEQ 629


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 162 QSAIKNVTVI--GGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIG 305
           QS  ++  +I  GGG++G  +  V+A   + +  + +    LA    SIG
Sbjct: 101 QSCTRDTILIAMGGGVIGDLVGYVAASFMRGIRFIQMPTTLLAMVDSSIG 150


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 378 SLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPS 512
           SLG +++A D      SAD + E + +  +  H L K L   A S
Sbjct: 430 SLGLVSSALDKITGLLSADNLSETVSQARDFSHTLSKSLKSRAKS 474


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +3

Query: 312 LSRVAKKMYKDNPQEGEKFV--NDSLGRINTATDAA--EASKSAD 434
           +S++A+     NP + E+FV   D+LG      D+   EAS  AD
Sbjct: 102 ISKIAEAAQASNPDDEEEFVMEEDNLGEAPLLVDSESYEASVKAD 146


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 207 GSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRV 323
           GS    + + A    +   +SND+LAKA  S+ T++S++
Sbjct: 317 GSFTTHLDSNASMAKSFSQISNDSLAKA-SSVATSMSQM 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,109
Number of Sequences: 5004
Number of extensions: 51419
Number of successful extensions: 132
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)