Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14b05
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 130 8e-31
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 110 9e-25
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 107 1e-23
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 92 4e-19
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 88 7e-18
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341... 31 0.65
02_05_0863 + 32313890-32314132,32314227-32314517,32315157-323154... 30 1.5
09_04_0321 - 16664316-16664939,16665369-16666262 30 2.0
07_01_0567 - 4214196-4214351,4214539-4214845,4215005-4215069,421... 30 2.0
05_07_0219 - 28474661-28475146,28475979-28476644 30 2.0
03_03_0047 - 14046750-14046788,14046896-14047045,14047143-140472... 29 2.6
10_08_0050 + 14469879-14470072,14470620-14471094 29 3.5
07_01_0595 - 4432642-4432926,4433062-4433769,4433964-4434164,443... 29 3.5
02_01_0675 - 5028910-5030379 29 3.5
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 28 6.0
08_02_0277 - 15226062-15226169,15227075-15227203,15227416-152275... 28 8.0
08_01_0065 + 452383-452629,452733-452868,453049-453118,453237-45... 28 8.0
07_03_0336 + 16911947-16912144,16912636-16912692,16912917-169136... 28 8.0
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 130 bits (315), Expect = 8e-31
Identities = 73/176 (41%), Positives = 107/176 (60%)
Frame = +3
Query: 147 SSSAMQSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVA 326
++ A I V VIG G MGSGIAQ++A AG V L+D AL++A SI ++L R+
Sbjct: 2 ATQATAREIAVVGVIGAGQMGSGIAQLAAAAGCGVLLLDSDTAALSRAVDSISSSLRRLV 61
Query: 327 KKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVA 506
K Q + S+ +I + E + ADLV+EAIVE+ ++K KLF +LD +
Sbjct: 62 AK-----GQLSQASCEHSIEQIKCVSSVQEL-RDADLVIEAIVESEDIKKKLFVELDKIT 115
Query: 507 PSHTIFASNTSSLSINEIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATY 674
I ASNTSS+SI +AS R + G+HFFNP P+M+L+E+++G++TSE +
Sbjct: 116 KPSAILASNTSSISITRLASATNRPCQVIGMHFFNPPPIMKLIEIIRGADTSEEVF 171
>02_02_0418 +
10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 110 bits (265), Expect = 9e-25
Identities = 60/166 (36%), Positives = 95/166 (57%), Gaps = 2/166 (1%)
Frame = +3
Query: 171 IKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKK--MYKD 344
I+ V VIGGGLMGSGIA + +V L +V+ L + +K I NL + K+ + KD
Sbjct: 309 IRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNPQFLQRGQKMIAANLEGLVKRGSLTKD 368
Query: 345 NPQEGEKFVNDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIF 524
+N ++ + A D ++ K D+V+EA++E I +K +F L+ V P H I
Sbjct: 369 K-------MNKAMSLLKGALDYSDF-KDVDMVIEAVIEKIPLKQSIFSDLEKVCPPHCIL 420
Query: 525 ASNTSSLSINEIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETS 662
A+NTS++ +N + +D+ G HFF+P +M LLE+V+ +TS
Sbjct: 421 ATNTSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTS 466
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 107 bits (256), Expect = 1e-23
Identities = 63/170 (37%), Positives = 92/170 (54%), Gaps = 2/170 (1%)
Frame = +3
Query: 159 MQSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNL-SRVAK-K 332
M + V ++GGGLMGSGIA + V L +V+ L I NL SRV K K
Sbjct: 310 MPRKVTKVAILGGGLMGSGIATAMILSNYPVILKEVNEKFLNAGIDRIKANLQSRVRKGK 369
Query: 333 MYKDNPQEGEKFVNDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPS 512
M ++ ++ V L E K DLV+EA++EN+++K ++F L+ PS
Sbjct: 370 MTEERYEKAMSLVTGVLDY--------ERFKDVDLVIEAVIENVKLKQQIFSDLEKYCPS 421
Query: 513 HTIFASNTSSLSINEIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETS 662
H + A+NTS++ +N I + KD+ G HFF+P VM LLE+V+ TS
Sbjct: 422 HCVLATNTSTIDLNLIGEKTRSKDRIVGAHFFSPAHVMPLLEIVRTQHTS 471
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 91.9 bits (218), Expect = 4e-19
Identities = 54/177 (30%), Positives = 89/177 (50%)
Frame = +3
Query: 132 VRNFSSSSAMQSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTN 311
+ N S I V ++GGGLMGSGIA V L +V+ L + N
Sbjct: 298 IPNISILGLTPRRIHKVAIVGGGLMGSGIATALISNNLLVILKEVNEQFLDAGISRVKAN 357
Query: 312 LSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQ 491
L + K+ Q ++ + L ++ D E + AD+V+EA++E++ +K K+F
Sbjct: 358 LQSLVKR-----GQMTKEDYENKLSLLSGVLDY-EQFREADVVIEAVIEDLSLKQKIFAD 411
Query: 492 LDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETS 662
L+ S+ I A+NTS++ ++ I +D+ G HFF+P M LLE+++ TS
Sbjct: 412 LEKYCHSNCILATNTSTIDLHLIGQKTSCQDRIAGAHFFSPAHAMPLLEIIRTHRTS 468
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 87.8 bits (208), Expect = 7e-18
Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 13/181 (7%)
Frame = +3
Query: 159 MQSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNL-SRVAK-K 332
M + V ++GGGLMGSGIA + V L +V++ L I NL SRV K
Sbjct: 306 MPRKVSKVAIVGGGLMGSGIATALMLSNYPVVLKEVNDKFLDAGIDRIKANLQSRVRNGK 365
Query: 333 MYKDNPQEGEKFVNDSLG--RINTATDAAEASKSADLVVE---------AIVENIEVKHK 479
M K+ ++ + + R E S +++ + A+VEN++VK +
Sbjct: 366 MTKEIYEKTLSLLTGVVDYERFKDVDLVIEESNTSNCYLAIYFIEQYWMAVVENVKVKQQ 425
Query: 480 LFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSET 659
+F L+ PSH + A+NTS++ ++ I +D+ G HFF+P VM LLE+V+ + T
Sbjct: 426 VFADLERYCPSHCVLATNTSTIDLDLIGEKTNSQDRIAGAHFFSPAHVMPLLEIVRSNHT 485
Query: 660 S 662
S
Sbjct: 486 S 486
>06_02_0257 -
13533689-13533714,13533799-13533925,13534013-13534121,
13534193-13534272,13534758-13534979,13536070-13536318,
13537032-13537484,13539834-13540556
Length = 662
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 207 GSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGT 308
GS +AQ+S +G VTL D DA+ K + GT
Sbjct: 604 GSKLAQISEMSGATVTLADERPDAIEKVVRISGT 637
>02_05_0863 +
32313890-32314132,32314227-32314517,32315157-32315493,
32315944-32316278,32316763-32317010,32317296-32317881,
32317970-32318083,32318165-32318287,32318325-32318531
Length = 827
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 297 SIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAA---EASKSADLVVEAIVEN 461
S G N + MY D+ E + FV+ + ++N ATD + AS+ LV+ ++N
Sbjct: 614 SFGRNEDDLDLLMYSDSELEEQTFVDQEVEKVNLATDKSWEDYASREFTLVLSKTLKN 671
>09_04_0321 - 16664316-16664939,16665369-16666262
Length = 505
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 205 WAPA*PRYLPKQDRMLPWLTSAMMLWLKPRRALAQTSAGSQRR 333
W P L QD + WL S+ LW K R LA T + RR
Sbjct: 110 WVPDNANVLGHQDVSMAWLPSSSPLW-KHMRTLASTLLFTSRR 151
>07_01_0567 -
4214196-4214351,4214539-4214845,4215005-4215069,
4215406-4215471,4215594-4215639,4215671-4216200
Length = 389
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +3
Query: 180 VTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKKMYKDNPQEG 359
V +GGG + + V +NVTL+D S L KA++ + N + + +D P
Sbjct: 107 VVDVGGGTGFTTLGIVKHVDNENVTLLDQSPHQLEKARQKVALNGVNIIEGDAEDLPYPT 166
Query: 360 EKF 368
+ F
Sbjct: 167 DTF 169
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 232 PKQDRMLPWLTSAMMLWLKPRRALAQTSAGSQRRCTKIIPKKER 363
P P TSA +LW +PR + G QRR ++ K+ R
Sbjct: 109 PTSPTPTPPPTSATLLWPRPRPTKEEEGEGLQRRTDAVLVKRLR 152
>03_03_0047 -
14046750-14046788,14046896-14047045,14047143-14047277,
14047615-14047673,14047755-14047871,14048035-14048073,
14048245-14048425,14049381-14049464,14049565-14049633,
14050175-14050315,14050435-14050527,14050767-14050895,
14051187-14051501
Length = 516
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Frame = +3
Query: 171 IKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAK--KMYKD 344
+KN+ + L G + A+ ++++VD+ L+K + + + V + K K
Sbjct: 120 LKNLKTVLESLRGRVTGKTKAELEDSISMVDILAVQLSKREAELLQQKAEVTELAKSLKL 179
Query: 345 NPQEGEKFVNDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQ 491
++ +K V++ R + T+ A S V +A+ E+ ++ KQ
Sbjct: 180 ASEDAKKIVDEE--RASAHTEIESARSSVQRVQQALQEHEKMSRTTGKQ 226
>10_08_0050 + 14469879-14470072,14470620-14471094
Length = 222
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +3
Query: 297 SIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSADLVVEAIVENIEVKH 476
S+ T +S KK D P GE+ + + G +T++D + + S++++ EN+ +
Sbjct: 73 SVATAVSLSLKKSNPD-PPTGEEGADLACGFTSTSSDRSNSGNSSEMLRFCRRENLGIGS 131
Query: 477 KL-FKQLDGVAPSHT 518
+L +L+ P+H+
Sbjct: 132 ELGGGELENAGPAHS 146
>07_01_0595 -
4432642-4432926,4433062-4433769,4433964-4434164,
4434296-4435288
Length = 728
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 217 MPEPIRPPPITVTFLIALCIAEELEKFLTITL 122
+P+PI P P TV L+ AE E + TI+L
Sbjct: 64 LPDPIHPVPCTVADLVLDVDAESGEAYATISL 95
>02_01_0675 - 5028910-5030379
Length = 489
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 177 NVTVIGGGLMGSGIAQVSAQAGQNVTLVDVS 269
++ V+GGG G +AQ A+AG +V +D S
Sbjct: 69 DLAVVGGGPAGLAVAQRVAEAGLSVCAIDPS 99
>03_05_0001 -
19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 614 RIEEMKTTKFVFPFYDGCNFIYR 546
R+EE+ TTK +F +D C YR
Sbjct: 310 RLEELPTTKHLFTLFDSCFPYYR 332
>08_02_0277 -
15226062-15226169,15227075-15227203,15227416-15227583,
15227665-15228123,15228865-15229008
Length = 335
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 342 DNPQEGEKFVNDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQ 491
DN V +S +I+T+ ++AEA K + ++E + + ++FK+
Sbjct: 212 DNLSRASSVVKESFSKIDTSNESAEAVKLLNTLLEGVEMTEKQLGEVFKK 261
>08_01_0065 +
452383-452629,452733-452868,453049-453118,453237-453330,
453426-453639,453756-453897,454076-454246,454586-454780
Length = 422
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 153 SAMQSAIKNVTVIGGGLMGSGIAQVSAQAGQN-VTLVDVSNDALAKAKKSIGTNLSRVAK 329
+A A +V VIG G +GS Q++ G + V VDV ++ L A+ T+ AK
Sbjct: 234 AAEMRAGDSVAVIGVGGVGSSCLQIAKAFGASEVIAVDVLDEKLQNARTLGATHTVNAAK 293
Query: 330 K 332
+
Sbjct: 294 E 294
>07_03_0336 +
16911947-16912144,16912636-16912692,16912917-16913696,
16914666-16914713,16914795-16916032,16916776-16916860,
16917323-16917379
Length = 820
Score = 27.9 bits (59), Expect = 8.0
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 14/117 (11%)
Frame = +3
Query: 246 NVTLVDVSNDALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSL---GRINTATDAAE 416
N+ + D+ + K +IG+ S+ AK + P DS GR N A
Sbjct: 563 NIGSITSRGDSSSDTKSNIGSVASKDAKTI-DAKPSTSSITSQDSKIGDGRSNIDGIANR 621
Query: 417 ASKSADL------VVEAIVENIEVKHKLFKQLD-GVAPSH----TIFASNTSSLSIN 554
+K+AD+ VV + N +VKH +D GV S T+ A+N S SI+
Sbjct: 622 DAKTADVKHNIRSVVNTYLRNFDVKHNTGNIVDGGVKHSDLKPGTVSAANVDSKSIS 678
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,368,165
Number of Sequences: 37544
Number of extensions: 334639
Number of successful extensions: 979
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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