Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14b04
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi...    42   9e-05
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    31   0.13 
SPAC13F5.07c |||previusly annotated as dubious, may not be prote...    30   0.30 
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    30   0.30 
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    30   0.30 
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    28   1.2  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.8  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    26   3.7  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    26   5.0  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    26   5.0  
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    25   6.5  
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1...    25   6.5  
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    25   8.7  
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    25   8.7  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   8.7  

>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
           Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
 Frame = +3

Query: 318 APKANEESTSAPRMLKLTLHDGK-VTCTGLEISHIPSLSINTPPGTKLLLKNEELEVCHG 494
           A  A ++ +   +M +L L D       GLE   I  + ++T  GTKLL+KN  + V  G
Sbjct: 137 AQDAVQKGSELKKMCRLILEDSNGQRFWGLERKPIKGIQLSTKLGTKLLVKN--VLVRRG 194

Query: 495 VVWLTPSVISVLGGTVSHMIEKWE 566
           V+ L P+  ++LGG+    IE+W+
Sbjct: 195 VLMLDPNNTTILGGS----IEEWD 214


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1024

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
 Frame = +3

Query: 30   LIIFNSFSQNNVNLTLNQNMSLRETLKELGWHLTEEGIDTITENGQIQDVNILSKKALDY 209
            L+IFN+ + + +   L    SL+ET K   WH +    +         +V+ L +  L Y
Sbjct: 756  LLIFNASTSSMMKTWLCAKFSLKETNKTSFWHSSYNLFNRQYHVDMPDNVSDLPQTRLCY 815

Query: 210  DLRDISEGSLPEDFVKDPSKLE---SPVVVQIQKIRNVSAPKANEESTSAPRMLKLTL 374
                 + G L E+  KD +  +   SP ++Q    R+     AN+  +    + +LT+
Sbjct: 816  GACVYNVGLLDEEKRKDLANSDLNSSPKLIQGNDSRSAHESSANKLFSFVHDISRLTI 873


>SPAC13F5.07c |||previusly annotated as dubious, may not be protein
           coding|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +3

Query: 168 IQDVNILSKKALDYDLRDISEGSLPEDFVKDPSKLESPVVVQIQKIRNVSAPKANEESTS 347
           +  +  LS++ +D  +  I+EG + E   ++  KL   + V  QK++  S PK   ++  
Sbjct: 18  LDGITALSQEWIDKVVDAINEGHVSESDERESRKLGEKMNVNSQKLKTSSPPKVVRKNKR 77

Query: 348 APRMLKLTLHD 380
               +K  L D
Sbjct: 78  HHTTVKSVLSD 88


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 277 APLLFKFRRLGMCQLLKLMKNQHL 348
           AP+ F+F + G C+L    KNQH+
Sbjct: 288 APICFEFAKYGFCELGTSCKNQHI 311


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 237 LPEDFVKDPSKLESPVVVQIQKIRNVSAPKANEESTSAPRMLK 365
           L +D +KDP+K+E+ V  Q+++ R +   + NEE    P   K
Sbjct: 342 LGDDAIKDPTKIEAEVRKQVEE-RRLRHERENEERKLTPEERK 383


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = +3

Query: 117 GWHLTEEGIDT--ITENGQIQDVNILSKKALD-YDLRDISEGSLPEDFVKDPSKLESPVV 287
           G H  +E + +   TE   ++  +I SK+      LR  S  S      K  ++ + PV 
Sbjct: 752 GQHARQESLPSQQTTETKHLRKESIPSKQPSGGQQLRQESLPSQQSSESKQSTQHQQPVE 811

Query: 288 VQIQKIRNVSAPKANEES 341
           VQ     +VSAPKA E S
Sbjct: 812 VQKSIQSDVSAPKAKEVS 829


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
 Frame = +3

Query: 39  FNSFSQNNVNLT---LNQNMSLRETLKELGWHLTEEGID-TITENGQ-IQDV--NILSKK 197
           ++  + NN+N+    LN N+  R +  E  W L ++ +D  I E  Q ++DV  N ++KK
Sbjct: 26  YHKDNPNNINIAKNLLNNNIQARCSTNEASWKLAQKELDLKIREYEQKLKDVKLNDINKK 85

Query: 198 A 200
           +
Sbjct: 86  S 86


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 87  MSLRETLKELGWHLTEEGIDTITENGQI 170
           M +RE  KE GW L   GI  +   G I
Sbjct: 342 MLMREAAKEYGWKLNNAGIALMWRGGCI 369


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 231 GSLPEDFVKDPSKLESPVVVQIQKIRNVSAPKANEESTSAPRMLKLTLHDG 383
           G + +  +KDPSK   P     + I+  +    N+  T APR L   L DG
Sbjct: 9   GRVAKGMLKDPSKKYKP----FKGIQLPNRQWPNKVLTKAPRWLSTDLRDG 55


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 472 KS*KFVTEWYGSPHQ*YLYWAEQYLI*LKNG 564
           KS ++  +W+G PH+ Y  W  + ++ L+NG
Sbjct: 833 KSFQYEIKWFGKPHK-YNTWVSREIL-LENG 861


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 300 KIRNVSAPKANEESTSAPRMLKLTLHDGKVTCTGLEISHIPSLSINTPPGTKLLLKN 470
           KI NV   K      +AP MLK    D  V  T      IP +++    GT + L++
Sbjct: 13  KIANVLDSKGTIIPEAAPVMLKKPAKDESVDSTIQVGDVIPDITLPDEDGTSIRLRD 69


>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 283

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 105 LKELGWHLTEEGIDTITENGQIQDVNILSKKALDYDLRDISEGSLPEDFVKD 260
           +KE G+ +T   +D +  N +    N    + ++  LRD S   LP +FV D
Sbjct: 64  MKEHGFGVTS--LDEVAYNAKFWGRNWNKGECIELVLRDASNRWLPFEFVMD 113


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = +3

Query: 486 CHGVVWLTPSVISVLGGTVSHMI 554
           C  +VW+   ++ + GG  +H++
Sbjct: 318 CFKLVWMEQGIVGLYGGLTAHLL 340


>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 222 ISEGSLPEDFVKDPSKLESPVVVQI 296
           +S+    EDF+K   K+E P +V +
Sbjct: 335 LSDSEPKEDFIKSDKKVEDPEIVAL 359


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 274 SNLDGSLTKSSGNDPSLMSLKS 209
           +N+ GSLTKSS    +L +++S
Sbjct: 289 ANISGSLTKSSSESKNLSTIQS 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,905
Number of Sequences: 5004
Number of extensions: 47853
Number of successful extensions: 142
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)