Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14b04
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0550 + 4058600-4058878,4059485-4059652,4060306-4060552,406... 67 9e-12
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 58 4e-09
01_03_0035 + 11838431-11838511,11838627-11839054,11839741-11841796 33 0.23
02_04_0619 - 24481641-24482291,24482426-24482640,24482770-244831... 29 2.2
04_03_0958 - 21241230-21241327,21241693-21241893,21241989-212421... 29 2.9
03_06_0483 - 34226496-34226864,34227140-34227360,34227677-342279... 29 3.8
02_01_0642 - 4803464-4805665,4806231-4806320 29 3.8
07_01_1107 + 10205351-10207519 28 6.7
12_02_0412 - 18799217-18801061 27 8.8
07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520 27 8.8
01_04_0096 - 15982944-15984066,15984296-15984949,15985037-15985305 27 8.8
>01_01_0550 +
4058600-4058878,4059485-4059652,4060306-4060552,
4061355-4061791
Length = 376
Score = 67.3 bits (157), Expect = 9e-12
Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 10/181 (5%)
Frame = +3
Query: 93 LRETLKELGWHLTEEGIDTITE---NGQIQDVNILSKKALDYDLRDISEGSLPEDFV--- 254
L ++L GW + + I E + + +D DLR SLP+
Sbjct: 19 LLQSLSARGWCFRDPSNEIIQELLHASPSPSPEAVETELVDVDLRLFGGKSLPDRAAAAA 78
Query: 255 --KDPSKLESPVVVQIQKIRNV--SAPKANEESTSAPRMLKLTLHDGKVTCTGLEISHIP 422
+ S L P+V+Q+ +R++ S A+ ++ R+L+ L DG +E IP
Sbjct: 79 TGRRLSYLHGPIVLQVVSVRDIYRSIIDASFKNPQQHRLLRFVLTDGISEAVAIEFFPIP 138
Query: 423 SLSINTPPGTKLLLKNEELEVCHGVVWLTPSVISVLGGTVSHMIEKWELNRSLAKHTRGG 602
+ + PGTK+ L+N+ + + +G++ L+ IS++GG V + E+W++N+ + +R
Sbjct: 139 FIIEDIAPGTKICLENK-IPIHNGILCLSAKNISIMGGVVQSLYEEWQMNQKFSGLSRSS 197
Query: 603 I 605
+
Sbjct: 198 L 198
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 58.4 bits (135), Expect = 4e-09
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Frame = +3
Query: 210 DLRDISEGSLPEDFVK-DPSKLESPVVVQIQKIRNVSAP---KANEESTSAPRMLKLTLH 377
D+ G LPE + L+ P+V+Q+ +I N+SAP + + R LKL++
Sbjct: 256 DMNACGAGVLPEGVGSMHNAVLDGPLVLQVDEIVNLSAPLRERYRDAHAGPKRCLKLSMT 315
Query: 378 DGKVTCTGLEISHIPSLSINTPPGTKLLLKNEELEVCHGVVWLTPSVISVLGGTVSHMIE 557
DG G+E I L + P G K++++N + + G+ L P VI +LGG + E
Sbjct: 316 DGIQRIYGMEYRPIKDLEVLAPAGFKIVIRN--VHIRRGLFMLVPEVIEILGGVDDELDE 373
>01_03_0035 + 11838431-11838511,11838627-11839054,11839741-11841796
Length = 854
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 462 LKNEELEVCHGVVWLTPSVISVLGGTVSHMIEKWE 566
+ E L +C GV SV S+L G MIEKWE
Sbjct: 254 VSEEILRMCGGVPLAITSVASILAGQGDMMIEKWE 288
>02_04_0619 -
24481641-24482291,24482426-24482640,24482770-24483154,
24483170-24483258,24485488-24485622,24485833-24487108
Length = 916
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +3
Query: 390 TCTGLEISHIPSLSINTPPGTKLLLKNEELEVCHGVVWLTPSVISVLGGTVSHMIE 557
T L I HI + + PG+KL +K+ EL G + + V+ V+GG ++ ++E
Sbjct: 318 TDPNLAIKHIEFIKGDAFPGSKLAVKDRELVALSGCLHASVGVV-VMGG-INRVLE 371
>04_03_0958 -
21241230-21241327,21241693-21241893,21241989-21242110,
21242462-21242536,21242626-21242714,21242808-21242888,
21243552-21243674
Length = 262
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 75 LNQNMSLRETLKELGWHLTEEGIDTITENGQIQDVNI-LSKKALDYDLRDISEGSLPEDF 251
L+QN S+ W EEG++T+ + + I LSKK LD + +P D
Sbjct: 74 LHQNTSIESIDITDTWEPLEEGLNTLETTRHVSLITITLSKKELDTSSPGY-QPPIPADQ 132
Query: 252 VKDPSKLE 275
V+ P+ +
Sbjct: 133 VRPPTDFD 140
>03_06_0483 -
34226496-34226864,34227140-34227360,34227677-34227933,
34228388-34228483,34228660-34228805,34229774-34229977
Length = 430
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 291 QIQKIRNVSAPKANEESTSAPRMLKLTLHDGK-VTCTGLEISHIPS 425
Q +K RN+S +A E S S PR ++T+ DG V + + +PS
Sbjct: 348 QCEKPRNISVIQAGEGSKSQPR--QITIDDGSPVASMNFDEAELPS 391
>02_01_0642 - 4803464-4805665,4806231-4806320
Length = 763
Score = 28.7 bits (61), Expect = 3.8
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 14/116 (12%)
Frame = +3
Query: 243 EDFVKDPSKLESPVVVQIQK-IRNVSAPKANEESTSAPRMLKLT-------LHDGKVTCT 398
E F+KDPS ++ P + ++N+ A E+ +A LK L GK T +
Sbjct: 648 EGFLKDPSDIKRPSDFSVHMGLQNLQTEAAEVEALAATTTLKKLADMAKGFLRSGK-TDS 706
Query: 399 GLEISHIPSLS-----INTPPGTKL-LLKNEELEVCHGVVWLTPSVISVLGGTVSH 548
G+ + PS++ T P ++ ++ + E E+ G+ LT +I+ G V+H
Sbjct: 707 GINLVASPSVNSTRIVSKTKPNKEMDMILDAEKEIA-GLFSLTEQLITEAGIDVAH 761
>07_01_1107 + 10205351-10207519
Length = 722
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +3
Query: 402 LEISHIPSLSINTPPGTKLLLKNEELEVCHGVVWLTPSVISVL 530
++++H SL+ P G KLLL LE+ H V + PS I VL
Sbjct: 660 IKLNHCSSLT-QLPQGIKLLLNLRCLEIAHSNVQM-PSGIRVL 700
>12_02_0412 - 18799217-18801061
Length = 614
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +3
Query: 414 HIPSLSINTPPGTKLLLKNEELEVCHGVVWLTPSVISV--LGGTVSHMIEKWELNRSLAK 587
H +++ P KL E +E C GV L V+ + ++EKW L R L K
Sbjct: 380 HQHAVAAAAPDDAKLAASLERIEKC-GVESLLLDVVGEGKTRAALDQLVEKWALPRRLQK 438
Query: 588 HT 593
T
Sbjct: 439 FT 440
>07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520
Length = 568
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 345 SAPRMLKLTLHDGKVTCTGLEISH--IPSLSINTPPGT 452
S+P L + HD V G ++ H + +L + PPGT
Sbjct: 283 SSPLKLPTSCHDSLVAMIGAKLDHATLDNLLVPAPPGT 320
>01_04_0096 - 15982944-15984066,15984296-15984949,15985037-15985305
Length = 681
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 477 LEVCHGVVWLTPSVISVLGGTVSHMIEKWELNRSLAKHTRGGIG 608
+E+CH +W ++ S LG T + + WEL RS + G G
Sbjct: 179 VELCHLKIWKPDALASYLGCTPTSI---WELARSSCRGGGDGSG 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,800,742
Number of Sequences: 37544
Number of extensions: 305690
Number of successful extensions: 822
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -