Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14b03
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 30 0.27
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 29 0.62
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 28 1.4
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 28 1.4
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 27 3.3
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 4.4
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 26 4.4
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce... 26 4.4
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 26 5.8
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 5.8
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 5.8
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 25 7.6
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 7.6
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 7.6
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 30.3 bits (65), Expect = 0.27
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = +2
Query: 23 FFANHCPFFKKFIKNTPNIHHHLHTIKRPVYVPGDSTINRIVTCTGTTILSSRNMLYDYP 202
F+A C + KK + + +LH++ V D+ NR V C+ + + YP
Sbjct: 55 FYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAV-CSQYQVQGFPTIKLVYP 113
Query: 203 AVRRDETVVDDYHGTK-IKDPYRWLEDPDSNETK 301
+ + DY+G + K +++ D ++ K
Sbjct: 114 SSKGSSLSSTDYNGDRSYKSLQKFVSDSIPSKVK 147
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 29.1 bits (62), Expect = 0.62
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +2
Query: 116 VPGDSTINRIVTCTGTTILSSRNMLYDYPAVRRDET--VVDDYHGTKIKDPYRWLEDPDS 289
+P +T +R + +S +YD PA + + T V+D++ T+I D E+ DS
Sbjct: 3 IPDSTTDSRHSLSSAALSSASFENIYD-PARKNESTNDVIDNHTDTEIDDHDNDHENLDS 61
Query: 290 NETKEFVEAQNK 325
N E EA N+
Sbjct: 62 NNNNENNEAFNE 73
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = -1
Query: 627 SEPLAESPYAKVDPSSVNLV---PESATVPSSDRVF 529
S PL +SP + V S+N+V P SA VP+S+ F
Sbjct: 383 SSPLIQSPGSYVSMPSINMVSSLPISAPVPNSNSQF 418
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = +2
Query: 71 PNIHHHLHTIKRPVYVPGDSTI----NRIVTCTGTTILSSRNMLY--DYPAVRRDETVVD 232
P IH H+ +KR + VPG + N ++ G T + D+ R ++ V +
Sbjct: 351 PPIHSHMRKVKRDLPVPGSKIVIPANNYLLAAPGLTATEEEYFTHATDFDPKRWNDRVNE 410
Query: 233 DYHGTKIKDPY 265
D + +I Y
Sbjct: 411 DENAEQIDYGY 421
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 411 HVPSGRAADTSSSRTPVCRTKMRCTCKMVSTANLASSWTRTL-CPKTARWR 560
H P+G +D + T RC C +V + + AS + C + + W+
Sbjct: 28 HTPNGSVSDNEENETSSTGEVTRCVCGIVESDDEASDGGLYIQCDQCSVWQ 78
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 122 GDSTINRIVTCTGTTILSSRNMLYDYPAVRRDE--TVVDDYHGTKIKD 259
GD TIN TC T R+MLY V R+ + D+ H + K+
Sbjct: 273 GDVTINPDATCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKE 320
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.2 bits (55), Expect = 4.4
Identities = 26/85 (30%), Positives = 36/85 (42%)
Frame = +2
Query: 242 GTKIKDPYRWLEDPDSNETKEFVEAQNKITRPYLDACPVQKSINERLTELWNYPKYSCPF 421
G + D + +PDS E + + R L P+Q + LTELWN + P
Sbjct: 436 GYCVLDEGHKIRNPDS-EISISCKQIRTVNRIILSGTPIQNN----LTELWNLFDFVFPG 490
Query: 422 RKGSRYFFFKNTGLQNQNALYVQDG 496
R G+ F QNQ AL + G
Sbjct: 491 RLGTLPVF------QNQFALPINIG 509
>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 498
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 263 YRWLEDPDSNETKEFVEAQNKITRPYLDA 349
++ LE N KE+++ I PY DA
Sbjct: 56 FKQLESTSKNNAKEYMKLSKVIVHPYKDA 84
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 536 LSEDGTVALSGTKFTE-DGSTLAYGLSASGSDW 631
+ DGT L G F+ GST AYG+ SG W
Sbjct: 175 IDSDGT-RLKGDLFSVGSGSTFAYGVLDSGYRW 206
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 126 SPGTYTGLLIVCK*WCMLGVFFINFLKNGQ*LAKKQRTNILS 1
S +++GL+IVC W ++ +I Q +K N++S
Sbjct: 585 SKSSFSGLIIVCLIWILVAAIYIILFPLWQ--GRKSLANVIS 624
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 5.8
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = -1
Query: 669 SSPVATSLKCIAIQSEPLAESPYAKVDPSSVNLVPESATVPSSDRVFGSKKTRGSPSRPS 490
+SP+ TS +A+ P A SP +PS +L ES + TR SP++PS
Sbjct: 550 ASPLKTSPVKLAVT--PQAPSPLPSSNPSQASLTEESLS------------TRSSPTKPS 595
Query: 489 CT 484
T
Sbjct: 596 TT 597
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 215 DETVVDDYHGTKIKDPY---RWLEDPDSNETKEFVE 313
D+ +D Y DP +WLE+P++ E KE +E
Sbjct: 376 DDRYIDVYAHPIGADPVLVDKWLENPETLEVKEVLE 411
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 576 SPKTDPPWRTDFLPAALIG*LYISKTL 656
+PK+ W T P++L+G +SK L
Sbjct: 303 TPKSQDNWTTQVTPSSLLGVSEVSKVL 329
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 179 RNMLYD-YPAVRRDETVVDDYHGTKIKDPYRW 271
RN L + Y A++ +E +V + H T++ Y W
Sbjct: 717 RNFLSEIYKAIKENEIIVAEEHDTELSFLYIW 748
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,863
Number of Sequences: 5004
Number of extensions: 62414
Number of successful extensions: 231
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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